View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11522_low_2 (Length: 320)
Name: NF11522_low_2
Description: NF11522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11522_low_2 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 27878928 - 27878624
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878928 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
27878829 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878828 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
27878729 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878728 |
tgttactctggtacctaacagtggtatcagagcccctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
27878629 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
27878628 |
ctgtg |
27878624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1234799 - 1235018
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234799 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
1234898 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234899 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
1234998 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1234999 |
tgttactctggtacctaaca |
1235018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26976350 - 26976131
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976350 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
26976251 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976250 |
cttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
26976151 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26976150 |
tgttactctggtacctaaca |
26976131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27874209 - 27873990
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874209 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
27874110 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27874109 |
cgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagatgcgtgataatattt |
27874010 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27874009 |
tgttactctggtacctaaca |
27873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 18968007 - 18968194
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
132 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968007 |
ctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtt |
18968106 |
T |
|
| Q |
133 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
220 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968107 |
tccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
18968194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30986606 - 30986830
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30986606 |
ttcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccc |
30986705 |
T |
|
| Q |
101 |
cgtgg--ttttttccccttatttgttgagggg---tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataa |
195 |
Q |
| |
|
||||| |||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30986706 |
cgtggttttttttttccttatttgttgaggggtactttccacgt-aaatattgtgcgttcagttcctcttttctcgtctcttattttagctacgtgataa |
30986804 |
T |
|
| Q |
196 |
tattttgttactctggtacctaacag |
221 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
30986805 |
tattttgttactctgatacctaacag |
30986830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 30966750 - 30966923
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966750 |
ttcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccc |
30966849 |
T |
|
| Q |
101 |
cgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct |
174 |
Q |
| |
|
|||| |||| || |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30966850 |
cgtgattttatttcccttatttgttgatgggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct |
30966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 30967674 - 30967810
Alignment:
| Q |
169 |
tcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
30967674 |
tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac |
30967773 |
T |
|
| Q |
269 |
tagtggagtggtaagaaaaatcttagtatgctctgtg |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30967774 |
tagtggtgtggtaagaaaaatcttagtatgctctgtg |
30967810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
| Q |
29 |
ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg |
128 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| |||||| |
|
|
| T |
21966677 |
ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg |
21966775 |
T |
|
| Q |
129 |
ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
215 |
Q |
| |
|
||||||||| | ||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
21966776 |
ggtttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc |
21966860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 305
Target Start/End: Complemental strand, 23012667 - 23012415
Alignment:
| Q |
52 |
agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt |
151 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| ||| | |||||| || | ||||||||||||| || ||||| |
|
|
| T |
23012667 |
agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgt |
23012571 |
T |
|
| Q |
152 |
gttcagttcctctttt-ctcgtctcttattttagctgcgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctg |
249 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||| |||| || || ||||| |||| |||||| || |
|
|
| T |
23012570 |
gttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttg |
23012471 |
T |
|
| Q |
250 |
ttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
305 |
Q |
| |
|
|| |||| | | |||| |||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
23012470 |
ttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtg |
23012415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 42266001 - 42266305
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266001 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
42266100 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
42266200 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266201 |
tgttactctggtatctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
42266300 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
42266301 |
ctgtg |
42266305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 48702040 - 48701736
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702040 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
48701941 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701940 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
48701841 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701840 |
tgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
48701741 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
48701740 |
ctgtg |
48701736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 30950401 - 30950098
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950401 |
ttctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccc |
30950302 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
30950301 |
cgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattt |
30950203 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950202 |
tgttactctggtacctaacagtggtatcagagctcctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
30950103 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
30950102 |
ctgtg |
30950098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42270720 - 42270941
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270720 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
42270819 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270820 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
42270919 |
T |
|
| Q |
201 |
tgttactctggtacctaacagt |
222 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
42270920 |
tgttactctggtatctaacagt |
42270941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 24520244 - 24520031
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520244 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
24520145 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24520144 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattt |
24520045 |
T |
|
| Q |
201 |
tgttactctggtac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24520044 |
tgttactctggtac |
24520031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48697351 - 48697131
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697351 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
48697252 |
T |
|
| Q |
101 |
cgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatt |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48697251 |
cgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatatt |
48697152 |
T |
|
| Q |
200 |
ttgttactctggtacctaaca |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48697151 |
ttgttactctggtacctaaca |
48697131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30945695 - 30945476
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945695 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccc |
30945596 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30945595 |
cgtgatttttt-cccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattt |
30945497 |
T |
|
| Q |
201 |
tgttactctggtacctaacag |
221 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
30945496 |
tgttactctgatacctaacag |
30945476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10427379 - 10427597
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgcc |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| || || |
|
|
| T |
10427379 |
ttctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttcc |
10427476 |
T |
|
| Q |
100 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatt |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10427477 |
ccgtagttttttccccttatttgttgaggggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatatt |
10427576 |
T |
|
| Q |
200 |
ttgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10427577 |
ctgttactctggtacctaaca |
10427597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
| Q |
12 |
ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt |
111 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttct---------ccccatg--ttttt |
48782936 |
T |
|
| Q |
112 |
ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
207 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
48782937 |
ccctttatttgttgagaaatttccacgt-aaatattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact |
48783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1979282 - 1979375
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactctt |
96 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||| ||||||| |||| ||||||||| ||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
1979282 |
ttctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaatttcttcctcttactgaaagttatctactctt |
1979375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
| Q |
69 |
ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
167 |
Q |
| |
|
||||||||| |||||||||| ||||||| || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| ||||||| |
|
|
| T |
17248015 |
ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt |
17248112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
| Q |
141 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa |
218 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| |||||||| |
|
|
| T |
36615438 |
aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa |
36615361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
| Q |
141 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
209 |
Q |
| |
|
||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| |||||||||||||| |
|
|
| T |
30165900 |
aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct |
30165968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
| Q |
116 |
ttatttgttgaggggtttccacgtaaaatattgtgtgtt |
154 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1979567 |
ttatttgttgaggggtttccacgt-aaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
| Q |
200 |
ttgttactctggtacctaacagtggtatcagagcccttggtt |
241 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1999189 |
ttgttattctgatacctaacagtggtatcagagcacttggtt |
1999230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 5823494 - 5823190
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823494 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
5823395 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823394 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
5823295 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823294 |
tgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
5823195 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
5823194 |
ctgtg |
5823190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 2817483 - 2817178
Alignment:
| Q |
1 |
ttctcctatttataagagagag--tggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgc |
98 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
2817483 |
ttctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttagtgagagttctttactcttgc |
2817384 |
T |
|
| Q |
99 |
cccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatat |
198 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2817383 |
cctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatat |
2817285 |
T |
|
| Q |
199 |
tttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2817284 |
tttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgcagtaataaactagtggtgtggtaagaaaaatcttagtatg |
2817185 |
T |
|
| Q |
299 |
ctctgtg |
305 |
Q |
| |
|
|| |||| |
|
|
| T |
2817184 |
ctatgtg |
2817178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5818732 - 5818513
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818732 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
5818633 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5818632 |
cgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattt |
5818533 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5818532 |
tgttactctggtacctaaca |
5818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 54545982 - 54546200
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
54545982 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccc |
54546081 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54546082 |
cgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattt |
54546180 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
54546181 |
tgttactctggtacctaaca |
54546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
| Q |
67 |
tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt |
166 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24659287 |
tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt |
24659190 |
T |
|
| Q |
167 |
tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
220 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
24659189 |
tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca |
24659136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
| Q |
106 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4579254 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta |
4579353 |
T |
|
| Q |
206 |
ctctggt |
212 |
Q |
| |
|
||||||| |
|
|
| T |
4579354 |
ctctggt |
4579360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtt |
132 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
31204950 |
ctctccttatatttagagag--gttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtt |
31204853 |
T |
|
| Q |
133 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
206 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| || |||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31204852 |
tccacgt-aaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac |
31204781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
| Q |
25 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgt |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||| || | |||||||||| ||| |||||||| ||| ||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt |
35977200 |
T |
|
| Q |
124 |
tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
182 |
Q |
| |
|
||| || ||| |||| ||||||||| |||||| || |||||||||| |||||||||| |
|
|
| T |
35977201 |
tgatggttttttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt |
35977258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
| Q |
176 |
ttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagag |
232 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
25877086 |
ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag |
25877142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 9444311 - 9444007
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444311 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
9444212 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444211 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
9444112 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444111 |
tgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
9444012 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
9444011 |
ctgtg |
9444007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9439591 - 9439372
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439591 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
9439492 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439491 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
9439392 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9439391 |
tgttactctggtacctaaca |
9439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
| Q |
147 |
tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt |
203 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
4799315 |
tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt |
4799371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 4844870 - 4844943
Alignment:
| Q |
148 |
gtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
221 |
Q |
| |
|
||||||||| ||| |||| |||| |||||||||| | |||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
4844870 |
gtgtgttcaattcttcttatctcaactcttatttttacagcgtgataatgttttgtttctcttgtacctaacag |
4844943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 41718508 - 41718812
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718508 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
41718607 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718608 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
41718707 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718708 |
tgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
41718807 |
T |
|
| Q |
301 |
ctgtg |
305 |
Q |
| |
|
||||| |
|
|
| T |
41718808 |
ctgtg |
41718812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34360054 - 34360273
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360054 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
34360153 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360154 |
cgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
34360253 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34360254 |
tgttactctggtacctaaca |
34360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41723234 - 41723453
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723234 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
41723333 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723334 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
41723433 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41723434 |
tgttactctggtacctaaca |
41723453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29585519 - 29585300
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585519 |
ttctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
29585420 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29585419 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattt |
29585320 |
T |
|
| Q |
201 |
tgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
29585319 |
tgttactctgatacctaaca |
29585300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 34352346 - 34352546
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352346 |
ttctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
34352445 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352446 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
34352545 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
34352546 |
t |
34352546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 57 - 305
Target Start/End: Original strand, 825632 - 825881
Alignment:
| Q |
57 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
156 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
825732 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc |
825831 |
T |
|
| Q |
256 |
cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
305 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
825832 |
cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtg |
825881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 5198874 - 5198664
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198874 |
ttctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
5198775 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198774 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
5198675 |
T |
|
| Q |
201 |
tgttactctgg |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
5198674 |
tgttactctgg |
5198664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 15602975 - 15603272
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| |||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15602975 |
ttctcctatttacaagatagaatggtaattgtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccc |
15603074 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
15603075 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattt |
15603174 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg |
298 |
Q |
| |
|
| ||||||| ||| ||||||| |||||||| | |||||||||| |||||||||| || | ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15603175 |
tcttactctcacacccaacagtgctatcagagtcattggttcgtaattgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagtatg |
15603272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 830288 - 830452
Alignment:
| Q |
57 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
156 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
830388 |
agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca |
830452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28715860 - 28716070
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
28715860 |
ttctcctatttataggaaacggtggtaattgtactctccttgcatttagagagatgtcctgtaatttcttccactttgtgaaagttctctattcttctct |
28715959 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
28715960 |
tgtgg-tttttccccttatttaatgaggggtttccacgt-aaatattgtgtgttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattt |
28716057 |
T |
|
| Q |
201 |
tgttactctggta |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28716058 |
tgttactctggta |
28716070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 30397096 - 30396920
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
132 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
30397096 |
ctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtt |
30396997 |
T |
|
| Q |
133 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg |
211 |
Q |
| |
|
|| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30396996 |
tcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg |
30396920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 13844013 - 13843719
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||| ||| | |||||||||||| || ||| |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| || || |
|
|
| T |
13844013 |
ttctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaacc |
13843914 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttca-gttcctcttttctcgtctcttattttagctgcgtgataatatt |
199 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||| |||||| |||||||| || || ||||||| |||| |||| | |||||||||||| |
|
|
| T |
13843913 |
tat-aatttttctccttatttgttgaggggtttccacgt-aaatat--tgtgttcatttttcttttttctcaaaacttactttacttacgtgataatatt |
13843818 |
T |
|
| Q |
200 |
ttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg |
298 |
Q |
| |
|
|| |||||||| || | | |||||||| |||||| |||| |||| ||| ||||||||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
13843817 |
ttattactctgatagccacaagtggtattagagccattggctcgtgatagttgttccgctgtagcaaactggtggagtggtaagaaaaatattagtatg |
13843719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
| Q |
60 |
tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt |
159 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | |||||||||| | |||||| ||||| | |||||||||||| |||||| |||| ||| |
|
|
| T |
31593068 |
tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt |
31592971 |
T |
|
| Q |
160 |
cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
220 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||| |||| |
|
|
| T |
31592970 |
cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca |
31592910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 13840447 - 13840240
Alignment:
| Q |
7 |
tatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggt |
106 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| ||||||||||||||| |||||||| || |||| || ||| || ||||||||||| || || |
|
|
| T |
13840447 |
tatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttgctccatg-- |
13840351 |
T |
|
| Q |
107 |
tttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
206 |
Q |
| |
|
|||| |||||| |||||||||| || || || |||||| ||||||| ||||||| |||||| ||| ||||| || | |||||||||||||||||| |
|
|
| T |
13840350 |
ttttcccccttgtttgttgaggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataatattttgttat |
13840254 |
T |
|
| Q |
207 |
tctggtacctaaca |
220 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
13840253 |
tctggtacccaaca |
13840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 8004170 - 8004292
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||| | |||||||||||| | |||||||||| |||| || | ||| |
|
|
| T |
8004170 |
ttctcctatttataagagagagtg-taattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcataccc |
8004268 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttg |
125 |
Q |
| |
|
||| | ||||||| ||||||||||| |
|
|
| T |
8004269 |
cgttg-tttttcctcttatttgttg |
8004292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
| Q |
85 |
ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag |
184 |
Q |
| |
|
||||||||||||| || | ||||||||| |||||| ||||| |||||||| ||||||||||||||||| || || |||| || ||| ||||||||| |
|
|
| T |
12175881 |
ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag |
12175784 |
T |
|
| Q |
185 |
ctgcgtgataatattt |
200 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12175783 |
ttgcgtgataatattt |
12175768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
| Q |
156 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
205 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| ||||||||| |||| |
|
|
| T |
9358207 |
agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta |
9358158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 42117769 - 42117876
Alignment:
| Q |
50 |
agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt |
149 |
Q |
| |
|
||||||||| | |||||||| | ||| |||||||| |||||| ||| | ||||||||| |||||||||| ||||| |||||| |||| ||||||||| |
|
|
| T |
42117769 |
agagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgt-aaatattgt |
42117866 |
T |
|
| Q |
150 |
gtgttcagtt |
159 |
Q |
| |
|
||||||||| |
|
|
| T |
42117867 |
atgttcagtt |
42117876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 16183849 - 16183636
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgcc |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16183849 |
ttctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgcc |
16183752 |
T |
|
| Q |
100 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183751 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatt |
16183652 |
T |
|
| Q |
200 |
ttgttactctggtacc |
215 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16183651 |
ttgttactctggtacc |
16183636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8140180 - 8139940
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccc |
100 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||| |||| ||| |
|
|
| T |
8140180 |
ttctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatcttaccc |
8140083 |
T |
|
| Q |
101 |
cgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
200 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
8140082 |
catggttttctccccttatttgttgaggggtttccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataatattt |
8139984 |
T |
|
| Q |
201 |
tgttactctggtacctaacagtggtatcagagcccttggttcgt |
244 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
8139983 |
tgttactctggtacccaacagtggtattagagccattggttcgt |
8139940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 300
Target Start/End: Complemental strand, 8138645 - 8138384
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
133 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt |
8138546 |
T |
|
| Q |
134 |
ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagc |
233 |
Q |
| |
|
|||| | || || |||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| ||||| |
|
|
| T |
8138545 |
ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagc |
8138447 |
T |
|
| Q |
234 |
ccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
300 |
Q |
| |
|
| ||||||||| | ||||||| || | |||| || ||||||||||||||||||||||||||| |
|
|
| T |
8138446 |
cattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct |
8138384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30235119 - 30235339
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttag-agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| | ||| |||||||| ||||||||| | |
|
|
| T |
30235119 |
ttctcctatttataagagagagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatc |
30235218 |
T |
|
| Q |
100 |
ccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatat |
198 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| || ||||||| |
|
|
| T |
30235219 |
ccgtggtttttttccccttattcgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatat |
30235317 |
T |
|
| Q |
199 |
tttgttactctggtacctaaca |
220 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
30235318 |
tttgctactctggtacccaaca |
30235339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 25441073 - 25441161
Alignment:
| Q |
217 |
aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
305 |
Q |
| |
|
|||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25441073 |
aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
25441161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
| Q |
62 |
taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc |
161 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || || ||||||| ||| || ||| || |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc |
5102653 |
T |
|
| Q |
162 |
tc-ttttctcgtctcttattttagctgcgtgataatattttgttact |
207 |
Q |
| |
|
|| ||||||| ||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5102652 |
tctttttctcatcttttattttagttgagtgataatattttgttact |
5102606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
| Q |
105 |
gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt |
204 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| || || |||||| |
|
|
| T |
36528529 |
gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt |
36528431 |
T |
|
| Q |
205 |
actctggtacctaaca |
220 |
Q |
| |
|
|||||| |||| |||| |
|
|
| T |
36528430 |
actctgatacccaaca |
36528415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 27413 - 27226
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
132 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27413 |
ctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
27314 |
T |
|
| Q |
133 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
220 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27313 |
tccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
27226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 46191330 - 46191546
Alignment:
| Q |
1 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgcc |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
46191330 |
ttctcctatttc-aagagagag-ggtaatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtc |
46191427 |
T |
|
| Q |
100 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46191428 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataatatt |
46191525 |
T |
|
| Q |
200 |
ttgttactctggtacctaaca |
220 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
46191526 |
ttgttactctggttcctaaca |
46191546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
133 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt |
30697201 |
T |
|
| Q |
134 |
ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
215 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30697200 |
ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc |
30697120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 4130215 - 4130401
Alignment:
| Q |
34 |
ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
132 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
4130215 |
ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt |
4130314 |
T |
|
| Q |
133 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
220 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
4130315 |
tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca |
4130401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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