View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11522_low_4 (Length: 301)
Name: NF11522_low_4
Description: NF11522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11522_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 28887096 - 28886816
Alignment:
| Q |
4 |
aacccaatgaccattccataacgagcctccatgaatcaacgccgcgcctaagcatcttgcagggtttagcccaacaccagcataaccggcccgacctgtt |
103 |
Q |
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| T |
28887096 |
aacccaatgaccattccataacgagcctccatgaatcaacgccgcgcctaagcatcttgccgggtttagcccaacaccagcataaccggcccgacccgtt |
28886997 |
T |
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| Q |
104 |
acagttatcgacacaaaaactgccaatgccatggcaccagctatcaccaagcataccattgtcaaccccaaattctttgacatctttttgtcaaaaccta |
203 |
Q |
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| T |
28886996 |
atagttatcgacacaaaaactgccaatgccatggcaccagctatcaccaagcataccattgtcaaccccaaattctttgacatctttttgtcaaaaccta |
28886897 |
T |
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| Q |
204 |
acgtgacacccaaaaagagtaccaaaaatgtacaagagaattccaataacaaagcatcatgctgattaatactagaattga |
284 |
Q |
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| T |
28886896 |
acgtgacacccaaaaagagtaccaaaaatgtacaagagaattccaataacaaagcatcatgctgattaatactagaattga |
28886816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 28882088 - 28881811
Alignment:
| Q |
7 |
ccaatgaccattccataacgagcctccatgaatcaacgccgcgcctaagcatcttgcagggtttagcccaacaccagcataaccggcccgacctgttaca |
106 |
Q |
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| T |
28882088 |
ccaatgtccattccataatgagcctccatgaagcaacgccgcgcctaagcatcttgctgggttaagaccaacgccagcgtaaccggtccgacctgatacc |
28881989 |
T |
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| Q |
107 |
gttatcgacacaaaaactgccaatgccatggcaccagctatcaccaagcataccattgtcaaccccaaattctttgacatctttttgtcaaaacctaacg |
206 |
Q |
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| T |
28881988 |
gttatagacaaaaatactgccaatgccatggaaccagctaccaccaaacacaccaatggcaagcccaaattctttgacctttttttgtcaaaagccaatg |
28881889 |
T |
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| Q |
207 |
tgacacccaaaaagagtaccaaaaatgtacaagagaattccaataacaaagcatcatgctgattaatactagaattga |
284 |
Q |
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| T |
28881888 |
tgacacccaaaaagagtaccaaaaatgtgcaagagaattccaataacaaagcttcgtgctgattaatactagaattga |
28881811 |
T |
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