View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_high_11 (Length: 440)
Name: NF11523_high_11
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_high_11 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 12844380 - 12844663
Alignment:
| Q |
19 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844380 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
12844479 |
T |
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| Q |
119 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844480 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgag |
12844579 |
T |
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| Q |
219 |
catgttgaagatttatcttgatagattttattgatgcttttattttgagttggacttatgctttgaagaaagggaaaagaagaa |
302 |
Q |
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| T |
12844580 |
catgttgaatatttatcttgatagattttattgatgcttttattttgagttggacttatgctttgaagaaagggaaaagaagaa |
12844663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 12844734 - 12844799
Alignment:
| Q |
373 |
cattttgtgagttggatcatgtact---gttctatgttttgaagaatgagagatgaagcaagtttt |
435 |
Q |
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| T |
12844734 |
cattttgtgagttggatcatgtactactgttctatgttttgaagaatgagagatgaagcaagtttt |
12844799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 25098624 - 25098824
Alignment:
| Q |
19 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
118 |
Q |
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| T |
25098624 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
25098723 |
T |
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| Q |
119 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgag |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25098724 |
aagaaaatgaagtccaagatgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtaatgag |
25098823 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
25098824 |
c |
25098824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 50438553 - 50438753
Alignment:
| Q |
19 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438553 |
gtagtggaagattcctatgatagtgtttcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
50438652 |
T |
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| Q |
119 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgag |
218 |
Q |
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| T |
50438653 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtaatgag |
50438752 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
50438753 |
c |
50438753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 27442257 - 27442068
Alignment:
| Q |
19 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442257 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
27442158 |
T |
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| Q |
119 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
208 |
Q |
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| T |
27442157 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
27442068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 45104 - 45293
Alignment:
| Q |
19 |
gtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45104 |
gtagtggaagattcctatgatagtgttacatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactg |
45203 |
T |
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| Q |
119 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
208 |
Q |
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| T |
45204 |
aagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
45293 |
T |
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