View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_high_19 (Length: 373)
Name: NF11523_high_19
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 10880047 - 10880396
Alignment:
| Q |
18 |
ctatacagtttatatttgataaaaccaacctaatacctaatgttgtatggggattggttacattctctttattggtgacgacttaaataggagcatgggt |
117 |
Q |
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| T |
10880047 |
ctatacagtttatatttgataaaaccaacttaatacttaatgttgtatggggattggttacattctctttattggtgacgacttaaataggagcatgggt |
10880146 |
T |
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| Q |
118 |
gaagaagtcatactatgtggtatgacttcgacttaatatagggagtttgaggattgggagtctcgtagcaatttccttttcctttcccttagatggtgtt |
217 |
Q |
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| T |
10880147 |
gaagaagtcatactatgtggtatgacttcgacttaatatagggagtttgaggattgggagtctcgtagcaatttccttttcctttcccttagatggtgtt |
10880246 |
T |
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| Q |
218 |
tttggtttagaaatcgaggtatgatttttgttagcttggaggaaacatcttttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttg |
317 |
Q |
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| T |
10880247 |
tttggtttagaaatcgaggtatgatttttgttagcttggaggaaacatcttttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttg |
10880346 |
T |
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| Q |
318 |
catggaacttcagtttgagatggacagtggaacatgcagctctctgctcc |
367 |
Q |
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| T |
10880347 |
catggaacttcagtttgagatggacagtggaacatgcagctctcagctcc |
10880396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 361
Target Start/End: Original strand, 10918511 - 10918844
Alignment:
| Q |
26 |
tttatatttgataaaaccaacctaatacctaatgttgtatggggattggttacattctctttattggtgacgacttaaataggagcatgggtgaagaagt |
125 |
Q |
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| T |
10918511 |
tttatattttataaaaccaacttaatacttaatgttttatgaggattggttacatcctctttattggtgacgatttaaatatgagcatgggtgaagtaga |
10918610 |
T |
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| Q |
126 |
catactatgtggtatgacttcgacttaatatagggagtttgaggattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggttt |
225 |
Q |
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| T |
10918611 |
catactatgtggtatgactttgacttaatatagggaggctgaggactgggagtctcgtagcaatttccttttcctttccctaagatggtgtttttggttt |
10918710 |
T |
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| Q |
226 |
agaaatcgaggtatgatttttgttagcttggaggaaacatcttttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaac |
325 |
Q |
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| T |
10918711 |
ggaaatcgaggtctga--tttgttagcttggaggaaacatattttggcaacctcaatgtctccgcgcaatatggcgatggtgtcatctttttcatgctac |
10918808 |
T |
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| Q |
326 |
ttcagtttgagatggacagtggaacatgcagctctc |
361 |
Q |
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|||| |||||||||| |||| ||||||||||||||| |
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| T |
10918809 |
ttcattttgagatgggcagttgaacatgcagctctc |
10918844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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