View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11523_high_21 (Length: 346)

Name: NF11523_high_21
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11523_high_21
NF11523_high_21
[»] chr1 (10 HSPs)
chr1 (1-329)||(6521645-6521974)
chr1 (1-188)||(6506903-6507090)
chr1 (1-329)||(6512662-6512991)
chr1 (1-171)||(6517220-6517390)
chr1 (257-329)||(6517061-6517133)
chr1 (79-196)||(47778041-47778158)
chr1 (99-196)||(47788183-47788280)
chr1 (275-321)||(6506763-6506809)
chr1 (99-192)||(47781969-47782062)
chr1 (87-164)||(6523733-6523810)
[»] scaffold0341 (4 HSPs)
scaffold0341 (1-188)||(928-1115)
scaffold0341 (1-188)||(8581-8769)
scaffold0341 (275-321)||(788-834)
scaffold0341 (275-321)||(8441-8487)
[»] chr7 (1 HSPs)
chr7 (8-140)||(722174-722305)
[»] chr5 (2 HSPs)
chr5 (61-111)||(28831318-28831368)
chr5 (61-113)||(28856512-28856564)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 6521645 - 6521974
Alignment:
Q  1 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521645 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaa 6521744  T
Q  101 aagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521745 aagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttg 6521844  T
Q  201 gaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaa-nnnnnnnnggatagtttaagaaataaagctgcatcaggggacagtgacctt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||||||||||||||||||    
T  6521845 gaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggacagtgacctt 6521944  T
Q  300 aaatatgctgtaggaagtgatgaggttggt 329  Q
    ||||||||||||||||||||||||||||||    
T  6521945 aaatatgctgtaggaagtgatgaggttggt 6521974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 6507090 - 6506903
Alignment:
Q  1 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaa 100  Q
    ||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||| ||||    
T  6507090 aacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaa 6506991  T
Q  101 aagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 188  Q
    |||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  6506990 aagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 6512991 - 6512662
Alignment:
Q  1 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaa 100  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| ||||||||| ||||    
T  6512991 aacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtcaaaatcgaa 6512892  T
Q  101 aagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttg 200  Q
    |||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| ||||| || |||| | |||||  |||||| |  ||    
T  6512891 aagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagacctttttatttaggatg 6512792  T
Q  201 gaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtg-aannnnnnnnggatagtttaagaaataaagctgcatcaggggacagtgacctt 299  Q
    || |   ||||| || |||||||| | ||| ||| | |||||  || ||        ||||| ||||||||||| |||| ||||||| || |||||||||    
T  6512791 gagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgacctt 6512692  T
Q  300 aaatatgctgtaggaagtgatgaggttggt 329  Q
    ||||||||||| ||||||||||||||||||    
T  6512691 aaatatgctgttggaagtgatgaggttggt 6512662  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 6517390 - 6517220
Alignment:
Q  1 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaa 100  Q
    ||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||||||  |||    
T  6517390 aacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtcaaaatagaa 6517291  T
Q  101 aagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 171  Q
    || |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517290 aacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 6517133 - 6517061
Alignment:
Q  257 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggt 329  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggt 6517061  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
Q  79 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 178  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| ||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa 47778140  T
Q  179 ttggacctgcttattttg 196  Q
    |||||||||| |||||||    
T  47778141 ttggacctgcatattttg 47778158  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  99 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 196  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 6506809 - 6506763
Alignment:
Q  275 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg 321  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg 6506763  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  99 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 192  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  87 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 164  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

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Target: scaffold0341 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1115 - 928
Alignment:
Q  1 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaa 100  Q
    ||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||| ||||    
T  1115 aacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaa 1016  T
Q  101 aagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 188  Q
    |||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  1015 aagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

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Target: scaffold0341; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 8769 - 8581
Alignment:
Q  1 aacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaa-ccga 99  Q
    ||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||  |||    
T  8769 aacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatacga 8670  T
Q  100 aaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 188  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  8669 aaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

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Target: scaffold0341; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 834 - 788
Alignment:
Q  275 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg 321  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg 788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 8487 - 8441
Alignment:
Q  275 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg 321  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg 8441  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 722174 - 722305
Alignment:
Q  8 ttggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagc 107  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   ||||||||||||||||    
T  722174 ttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaaaccgaaaagaagc 722272  T
Q  108 aattggatggtacaacgatgaagaatgcatgtt 140  Q
    |||||||| |||| | |||||| ||||||||||    
T  722273 aattggattgtacgatgatgaaaaatgcatgtt 722305  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  61 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 111  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 28856564 - 28856512
Alignment:
Q  61 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattgg 113  Q
    |||||||  ||||||||||||||| |||||| ||||  |||||||||||||||    
T  28856564 aattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattgg 28856512  T

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