View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_high_29 (Length: 259)
Name: NF11523_high_29
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 31319206 - 31319268
Alignment:
| Q |
171 |
aggacatagcattcatgcttgctccaagataaatgctgctaccaatgttcaagttactaagag |
233 |
Q |
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| T |
31319206 |
aggacatagcattcatgcttgctccaagataaatgctgctaccaatgttcaagttactaagag |
31319268 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 36769178 - 36769268
Alignment:
| Q |
118 |
gtcatggttcagtatgaaaaataccctctgttttgttcccactgcaaaaccataggacatagcattcatgcttgctccaagataaatgctg |
208 |
Q |
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| T |
36769178 |
gtcatggttcagtatgagaaatatcctcttttttgtgctcattgcaggtccttaggacataacattcatgcttgttcaaaaatgaatgctg |
36769268 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 11774957 - 11775040
Alignment:
| Q |
18 |
caggcgttttgggctatttgctagagtccttattgatgttgacatgagtgaaaatatgtttgaatctgtgattgtggagaggga |
101 |
Q |
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| T |
11774957 |
caggcgctttgggttctttgctagagttttaattgatgttgatttgagtgaaaaaatgtttgaatcagttattgtggaaaggga |
11775040 |
T |
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