View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_high_31 (Length: 246)
Name: NF11523_high_31
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 3340440 - 3340652
Alignment:
| Q |
19 |
aacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggtatttttc |
118 |
Q |
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| T |
3340440 |
aacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggtattttac |
3340539 |
T |
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| Q |
119 |
ttaatctaaaatctttcatgcatattaaaatgttacattttccctaaaatatatgctacattttctatttttccttgctgatacaaaatactcacataaa |
218 |
Q |
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| T |
3340540 |
ttaatctaaaatctttcatgcatattaaaatgttacattttccctaaaatatatgctacattttctatttttccttgctgatacaaaatactcacataaa |
3340639 |
T |
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| Q |
219 |
tttatgaaacagc |
231 |
Q |
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| T |
3340640 |
tttatgaaacagc |
3340652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 3332865 - 3332931
Alignment:
| Q |
17 |
caaacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaata |
83 |
Q |
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| T |
3332865 |
caaacatgttattcttggaatctcctgttggagttggattttcttattcaaatacaaccagtgaata |
3332931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 35794732 - 35794644
Alignment:
| Q |
23 |
tgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggt |
111 |
Q |
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| T |
35794732 |
tgttattcctagaatctcctgtcggagttggcttttcctattcaaatacaaccagtgattatcaacaattgggtgatgacttcacaggt |
35794644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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