View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11523_high_35 (Length: 211)

Name: NF11523_high_35
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11523_high_35
NF11523_high_35
[»] chr3 (5 HSPs)
chr3 (113-193)||(4167272-4167352)
chr3 (42-115)||(4167474-4167547)
chr3 (113-193)||(4151503-4151586)
chr3 (139-182)||(7021282-7021325)
chr3 (62-115)||(4152183-4152241)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 4167352 - 4167272
Alignment:
Q  113 attgtaagtgacatacatcagttacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt 193  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167352 attgtaagtgacatacatcagttacgaattagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt 4167272  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 4167547 - 4167474
Alignment:
Q  42 gtaatattatagtgtgctaataataatctgcgttacatgcaggacttgatataaaatgaaattcatcgagcatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167547 gtaatattatagtgtgctaataataatctgcgttacatgcaggacttgatataaaatgaaattcatcgagcatt 4167474  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 4151586 - 4151503
Alignment:
Q  113 attgtaagtgacatacatcagtt---acgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt 193  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4151586 attgtaagtgacagacatcagtttatacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt 4151503  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 7021325 - 7021282
Alignment:
Q  139 aaatagttggatatagcagacgatgtaatctacatgataccatg 182  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  7021325 aaatagttggatacagcagacgatgtaatctatatgataccatg 7021282  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 4152241 - 4152183
Alignment:
Q  62 taataatctgcgttacatgcaggacttgata-----taaaatgaaattcatcgagcatt 115  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||| ||||||    
T  4152241 taataatctgcgttacatgcaggacttgatagtagctaaaatgaaattcatcaagcatt 4152183  T

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