View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_high_5 (Length: 640)
Name: NF11523_high_5
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Complemental strand, 35237790 - 35237155
Alignment:
| Q |
1 |
gattgcggtgtgcggacaatgcctacatgagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35237790 |
gattgcggtgtgcggacaatgcctacatgagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttatt |
35237691 |
T |
|
| Q |
101 |
ggtggatttcaggtaattaaactatcctgttgtgctgttttatggattgaagtctcttgttttcatgtgtcgtattcctctgaaaatgaaaaaattttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| |
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| T |
35237690 |
ggtggatttcaggtaattaaactatcctgttgtgctgttttatggattgaagtctcttgttttcacgtgttgtattcctctgaaaatgaaaaacttttat |
35237591 |
T |
|
| Q |
201 |
gtttttaaatatttcaactctaagttgttgtctttggttgttttatgtaagaaataaagttgttgcatattgcagaacatggaattgtggattcctgaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35237590 |
gtttttaaatatttcaactctaagttgttgtctttggttgttttatgtaagaaataaagttgttgcatattgcagaacatggaattgtggattcctgaga |
35237491 |
T |
|
| Q |
301 |
ctggacaagtatatcatattcatgcccatactaatgcaacaattactggactagcagcttgtactcaaaatgaattcattgcatcatgtagcagtgactg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
35237490 |
ctggacaagtatatcatattcatgcccatactaatgcaacaattactggactagcagcttgtcctcaaaatgaattcattgcatcatgtagcagcgactg |
35237391 |
T |
|
| Q |
401 |
tactatgaaaatatggaaatgaagttccagttaatgtctttgttccttggtgtaaacttcgttccatgcttcagttttcaggatttgttagttaaatttg |
500 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35237390 |
tactgtgaaaatatggaaatgaagttccagttaatgtctttgttccttggtgtaaacttcgttccatgcttcagttttcaggatttgttagttaaatttg |
35237291 |
T |
|
| Q |
501 |
tgtaaatgcaaattttttcttgtagctagttatatagtgaaagaattattttttgctgtaaactcacaccatctactatagacatgtaatcaaatgaaat |
600 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35237290 |
tgtaaatgcaaattttttcttgtagctagtcatatagtgaaagaattattttttgctgtaaactcacaccatctactatagacatgtaatcaaatgaaat |
35237191 |
T |
|
| Q |
601 |
atgtcataagtatggaacttctggtctctgcttctc |
636 |
Q |
| |
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|||||||||||||| |||||||||||| || ||||| |
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| T |
35237190 |
atgtcataagtatgaaacttctggtctttgtttctc |
35237155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 35270904 - 35270815
Alignment:
| Q |
27 |
atgagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttattggtggatttcaggtaa |
116 |
Q |
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||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||| | ||||||||||| | |||||||||| |
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| T |
35270904 |
atgagtatccatcaaatgggaagaggtttcagtccgtcatattccatcctcgataccctaacgtcttagttattggttgttttcaggtaa |
35270815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 35253040 - 35252953
Alignment:
| Q |
29 |
gagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttattggtggatttcaggtaa |
116 |
Q |
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|||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||| | ||||| ||| ||| |||||||||| |
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| T |
35253040 |
gagtatcaatcaaacgggaagaggtttcagtctgtcatattccatcctcgataccctaacgtcttagttgttgctggttttcaggtaa |
35252953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 35246414 - 35246328
Alignment:
| Q |
30 |
agtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttattggtggatttcaggtaa |
116 |
Q |
| |
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|||||| |||||||||||| ||||||||||| |||| ||||||||| |||||||| | ||||||||||||| |||||||||| |
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| T |
35246414 |
agtatccatcaaatgggaacaggtttcagtctgtcatattccatcctcgataccctggcgtcttagttattggtggttttcaggtaa |
35246328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 35240789 - 35240737
Alignment:
| Q |
29 |
gagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagata |
81 |
Q |
| |
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|||||||||||| | ||||||||||||||||| ||||| ||||||||| |||| |
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| T |
35240789 |
gagtatcaatcagacgggaagaggtttcagtctatcatattccatcctcgata |
35240737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 35275124 - 35275089
Alignment:
| Q |
29 |
gagtatcaatcaaatgggaagaggtttcagtccatc |
64 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
35275124 |
gagtatccatcaaatgggaagaggtttcagtccatc |
35275089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 35240390 - 35240340
Alignment:
| Q |
406 |
tgaaaatatggaaatgaagttccagttaatgtctttgttccttggtgtaaa |
456 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
35240390 |
tgaagatatggaaatgaagttctagttaatgtctctgttatttggtgtaaa |
35240340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 35252642 - 35252592
Alignment:
| Q |
406 |
tgaaaatatggaaatgaagttccagttaatgtctttgttccttggtgtaaa |
456 |
Q |
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|||| ||||||||||||||||| ||| ||||||| ||||| |||||||||| |
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| T |
35252642 |
tgaagatatggaaatgaagttctagtaaatgtctctgttctttggtgtaaa |
35252592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 35282563 - 35282478
Alignment:
| Q |
406 |
tgaaaatatggaaatgaagttccagttaatgtct-ttgttccttggtgtaaacttcgttccatgcttcagttttcaggatttgttag |
491 |
Q |
| |
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|||| |||| |||||||||||| ||| |||||| |||||| |||||||||| ||| | || |||||||||||| |||||||||||| |
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| T |
35282563 |
tgaacatatcgaaatgaagttctagtaaatgtcagttgttctttggtgtaaa-ttcctcccctgcttcagttttgaggatttgttag |
35282478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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