View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11523_high_7 (Length: 595)

Name: NF11523_high_7
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11523_high_7
NF11523_high_7
[»] chr8 (16 HSPs)
chr8 (322-582)||(29215411-29215671)
chr8 (19-281)||(29215106-29215371)
chr8 (185-282)||(29253736-29253833)
chr8 (188-282)||(29357104-29357198)
chr8 (188-282)||(29363663-29363757)
chr8 (189-282)||(29317308-29317401)
chr8 (187-282)||(29310829-29310924)
chr8 (364-411)||(29316726-29316773)
chr8 (189-282)||(29340273-29340366)
chr8 (189-245)||(29245461-29245517)
chr8 (368-417)||(29339354-29339403)
chr8 (186-282)||(29223525-29223621)
chr8 (365-405)||(29253170-29253210)
chr8 (365-411)||(29244686-29244732)
chr8 (372-449)||(29232669-29232746)
chr8 (507-547)||(29356565-29356605)
[»] chr3 (3 HSPs)
chr3 (186-282)||(43815346-43815442)
chr3 (190-282)||(34760793-34760885)
chr3 (363-416)||(43815964-43816017)
[»] chr2 (4 HSPs)
chr2 (188-282)||(30931326-30931420)
chr2 (184-282)||(30910383-30910481)
chr2 (184-282)||(30919832-30919930)
chr2 (365-411)||(30910630-30910676)
[»] chr5 (1 HSPs)
chr5 (190-281)||(14497823-14497914)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 322 - 582
Target Start/End: Original strand, 29215411 - 29215671
Alignment:
Q  322 tttaatttttcttgaaaaaggttgagaaatgttttgaagacatttttaacatacctgaattgtcttaacaccaggcttgttgatccgttgtagatgcatt 421  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  29215411 tttattttttcttgaaaaaggttgagaaatgttttaaagacatttttaacatacctgaattgtcttaacaccaggcttgttgattcgtcgaagatgcatt 29215510  T
Q  422 tttatggtcctcttcaacttatgaaactcttcatttggtagaaaagtttgattttggccacttgtttctgaagaatagacatgacaaaccaaagaaacaa 521  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29215511 tttatggtcctcttcaacttgtgaaactcttcatttggtagaaaagtttgattttggccacttgtttctgaagaatagacatgacaaaccaaagaaacaa 29215610  T
Q  522 agagaagaaaatgaaggaggagggagataactggggagttgaaatccatgtttgtgtttgt 582  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29215611 ggagaagaaaatgaaggaggagggagataactggggagttaaaatccatgtttgtgtttgt 29215671  T

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Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 29215106 - 29215371
Alignment:
Q  19 aactccacaattgaaagttataatcttcaatgcccatttgcttatgctctcttggtctctctggaggatcctatacacataaaacctaacaattataagt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29215106 aactccacaattgaaagttataatcttcaatgcccatttgcttatgctctcttggtctttctggaggatcctatacacataaaacctaacaattataagt 29215205  T
Q  119 taaaatgtaattatataaaagaaattatgaattttaatttccttttgatcgag---nnnnnnnnctaagaaaaataccaatggtttttgtcctctcaacg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  29215206 taaaatgtaattatataaaagaaattatgaattttaatttccttttgatcgagaaataaaaaaactaagaaaaataccaatggtttttgtcctctcaacg 29215305  T
Q  216 taggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactct 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29215306 taggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactct 29215371  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 29253833 - 29253736
Alignment:
Q  185 aaaaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||| || ||||||    
T  29253833 aaaaataccaatggtttttgtcctttcaatagaggatgatcaaaagctggttgtttatgagacataacacaatctatgatatcatcatgagaactctg 29253736  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 29357198 - 29357104
Alignment:
Q  188 aataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||||||  |||| ||||   ||||||||| |||||||||||||||||||  | |||||| ||||||||||||||||| ||||||||    
T  29357198 aataccaatggttttgttcctttcaataaaggatgatcgaaagccggttgtttatgagtcaaaacacagtctatgatatcaccatcgggactctg 29357104  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 29363757 - 29363663
Alignment:
Q  188 aataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    ||||||||||||||||||||| ||||   |||||||||||||||    |||||||||| ||  | ||||||||||||||||||||||||||||||    
T  29363757 aataccaatggtttttgtcctttcaatagaggatgatcaaaagctaactgtttatgagttaatatacaatctatgatatcaccatcaggactctg 29363663  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 29317401 - 29317308
Alignment:
Q  189 ataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||||||||||| ||||    ||||||||||||||  |||||||||| |  | || ||||||||||||||||||||||||||||||    
T  29317401 ataccaatggtttttgtcctttcaataagggatgatcaaaagctagttgtttatgtgtcaaaatacaatctatgatatcaccatcaggactctg 29317308  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 29310924 - 29310829
Alignment:
Q  187 aaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||||||||||||| ||||   ||||||||||||||| ||||||||||| |  | |||||| || | |||||| ||||||||||||||    
T  29310924 aaataccaatggtttttgtcctttcaataaaggatgatcaaaagctggttgtttatgtgtcaaaacacagtcaacgatatcgccatcaggactctg 29310829  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 29316773 - 29316726
Alignment:
Q  364 tttttaacatacctgaattgtcttaacaccaggcttgttgatccgttg 411  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  29316773 tttttaacatgcctgaattgtcttaacagcaggcttgttgatccgttg 29316726  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 29340366 - 29340273
Alignment:
Q  189 ataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||||||| ||| ||||    ||||||||||||||  ||||||||||||  | || ||| ||||| ||||||||||||||||||||    
T  29340366 ataccaatggtttttgccctttcaataagggatgatcaaaagctagttgtttatgagtcaaaatacagtctattatatcaccatcaggactctg 29340273  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 29245517 - 29245461
Alignment:
Q  189 ataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgag 245  Q
    |||||||||||||||||||| ||||   ||||||||||||||| |||||||||||||    
T  29245517 ataccaatggtttttgtcctttcaataaaggatgatcaaaagctggttgtttatgag 29245461  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 29339403 - 29339354
Alignment:
Q  368 taacatacctgaattgtcttaacaccaggcttgttgatccgttgtagatg 417  Q
    |||||| |||||||||| |||||| ||||||||||||||||||| |||||    
T  29339403 taacatgcctgaattgttttaacagcaggcttgttgatccgttgaagatg 29339354  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 29223621 - 29223525
Alignment:
Q  186 aaaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||| ||||||| || ||||   || |||||| |||||  ||||||||| | | |||||||||||||| ||||| ||||| ||||||||    
T  29223621 aaaataccaatgatttttgttctttcaatagagaatgatcgaaagctagttgtttatcaaacacaacacaatctattatatcgccatcgggactctg 29223525  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 29253210 - 29253170
Alignment:
Q  365 ttttaacatacctgaattgtcttaacaccaggcttgttgat 405  Q
    ||||||||||||||||||||||||||| || ||||||||||    
T  29253210 ttttaacatacctgaattgtcttaacaacatgcttgttgat 29253170  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 29244732 - 29244686
Alignment:
Q  365 ttttaacatacctgaattgtcttaacaccaggcttgttgatccgttg 411  Q
    ||||||||||||||||||||||||| | | |||||||||||| ||||    
T  29244732 ttttaacatacctgaattgtcttaatagctggcttgttgatctgttg 29244686  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 29232746 - 29232669
Alignment:
Q  372 atacctgaattgtcttaacaccaggcttgttgatccgttgtagatgcatttttatggtcctcttcaacttatgaaact 449  Q
    |||||||||||||||||| |  ||||||||| ||| |||| ||| |  ||||||||||| | |||||||| |||||||    
T  29232746 atacctgaattgtcttaataggaggcttgttaatctgttgaagacggttttttatggtctttttcaacttgtgaaact 29232669  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 29356605 - 29356565
Alignment:
Q  507 aaaccaaagaaacaaagagaagaaaatgaaggaggagggag 547  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  29356605 aaaccaaacaaacaatgagaagaaaatgtaggaggagggag 29356565  T

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Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 43815346 - 43815442
Alignment:
Q  186 aaaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    ||||||||||||||||||| ||| ||||   ||||||||||||||| ||||||||||| | || ||||||||||||||||||||| |||||||||||    
T  43815346 aaaataccaatggtttttgccctttcaataaaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctg 43815442  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 34760793 - 34760885
Alignment:
Q  190 taccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    |||||||||||| || ||| | | | |||||||||||||||| ||||| | |||||||| || ||||||||| | ||||||||| ||||||||    
T  34760793 taccaatggtttatgccctttaagcttaggatgatcaaaagctggttgatgatgagataaaatacaatctatcaaatcaccatctggactctg 34760885  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 43815964 - 43816017
Alignment:
Q  363 atttttaacatacctgaattgtcttaacaccaggcttgttgatccgttgtagat 416  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| ||||| ||||    
T  43815964 atttttaacatacatgaattgtcttgacagctggcttgttgattcgttgaagat 43816017  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 30931326 - 30931420
Alignment:
Q  188 aataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    ||||||||||||||||||||| ||||   ||||||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||| | ||||||    
T  30931326 aataccaatggtttttgtcctttcaatagaggatgatcaaaagctggttgtttatgagacacaacgcaatctataatatcgccatccgaactctg 30931420  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 30910383 - 30910481
Alignment:
Q  184 gaaaaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    ||||||||||||| ||||||||||| |||||  | ||||||||||||| |||||||| ||||| | |||||| ||||| ||||| ||||| ||||||||    
T  30910383 gaaaaataccaatagtttttgtcctttcaacagaagatgatcaaaagctggttgtttgtgagacagaacacagtctataatatcgccatctggactctg 30910481  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 30919832 - 30919930
Alignment:
Q  184 gaaaaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactctg 282  Q
    ||||||||||| ||||||||||||| | ||   ||||||||||||||| |||||||| ||||| |||||||| ||||| ||||| || || ||||||||    
T  30919832 gaaaaataccagtggtttttgtccttttaataaaggatgatcaaaagctggttgtttgtgagacacaacacagtctataatatcgccgtccggactctg 30919930  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 30910630 - 30910676
Alignment:
Q  365 ttttaacatacctgaattgtcttaacaccaggcttgttgatccgttg 411  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  30910630 ttttaacatacttgaattgtcttaacagcaggcttgttgatctgttg 30910676  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 14497823 - 14497914
Alignment:
Q  190 taccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactct 281  Q
    ||||| |||| |||||||| | ||| |||||||||||||||| ||||||| ||||||  |||| || ||||| |||||||| ||||||||||    
T  14497823 taccagtggtctttgtccttttaacataggatgatcaaaagctggttgttgatgagacgcaacgcattctataatatcaccgtcaggactct 14497914  T

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