View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_14 (Length: 419)
Name: NF11523_low_14
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 179 - 402
Target Start/End: Complemental strand, 26880546 - 26880320
Alignment:
| Q |
179 |
cagtcattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccatcagcatggtgtttcctttgtgcctttttatctgt |
278 |
Q |
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| T |
26880546 |
cagtcattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccatcagcatggtgtttcctttgtgcctttttatctgt |
26880447 |
T |
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| Q |
279 |
tgtaaagtcctgaagtggtttaatgtcgagaaga---aatttgttctacttctttagcttgatggatgataatacaaattgattcagataaattatctcc |
375 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26880446 |
tgtaaagtcctgaagtggtttaatgtcgagaagaaataatttgttctacttctttagcttgatggatgataatacaaattgattcagataaattatctcc |
26880347 |
T |
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| Q |
376 |
aaataaggatcatgccgttgttaaatc |
402 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
26880346 |
aaataaggatcatgccgctgttaaatc |
26880320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26880677 - 26880547
Alignment:
| Q |
1 |
atttccataaactcttaccatcttaatttttatgtcttgttgcttgcggtgttgtgtttttagggcaagttttttccgaagcatttaattttcactgatg |
100 |
Q |
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| T |
26880677 |
atttccataaactcttaccatcttaattttcatgtcttgttgcttgcggtgttgtgtttttagggcaagttttttccgaagcatttaattttcactgata |
26880578 |
T |
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| Q |
101 |
aaagttttgtattttgatgataccagtaatg |
131 |
Q |
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| T |
26880577 |
aaagttttgtattttgatgataacagtaatg |
26880547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 40250245 - 40250196
Alignment:
| Q |
195 |
tcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccat |
244 |
Q |
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| T |
40250245 |
tcttgaaatttcgtcttacattatattttcatattttgcagtttcaccat |
40250196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 40249897 - 40249859
Alignment:
| Q |
364 |
taaattatctccaaataaggatcatgccgttgttaaatc |
402 |
Q |
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| T |
40249897 |
taaattatctccaaataaggatcatgctgttgttaaatc |
40249859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 40707502 - 40707441
Alignment:
| Q |
183 |
cattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccat |
244 |
Q |
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||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
40707502 |
cattatagatattcttaaaattctgtcttacattatattttcatactttgtagtttcaccat |
40707441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 15161043 - 15161003
Alignment:
| Q |
319 |
ttctacttctttagcttgatggatgataatacaaattgatt |
359 |
Q |
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|||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
15161043 |
ttctgcttctttagcttgattgatgataatataaattgatt |
15161003 |
T |
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