View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_15 (Length: 417)
Name: NF11523_low_15
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 29598037 - 29597649
Alignment:
| Q |
19 |
acttgtcaccaaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgagg |
118 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
29598037 |
acttgtcaccaaccttgcagaccaggcaagctaactttttccttcgggtatgatatttcaactagaacttataatgctgtggttttgtgttctagggagg |
29597938 |
T |
|
| Q |
119 |
tgaaagttttcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaaccaagg |
218 |
Q |
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||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| || ||||||| |||||||||||||||||| |
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| T |
29597937 |
tgaaagttttccgtttcggtgataatatttggagaaaaattgtaagttttactccttataaccttcttgatacccttggctgtagttatgtgaaccaagg |
29597838 |
T |
|
| Q |
219 |
agtgcatttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagaca |
318 |
Q |
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||||||||||||||||||| ||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29597837 |
agtgcatttgagtggcactgttaactggatatccatttatctgaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagaca |
29597738 |
T |
|
| Q |
319 |
tacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatggtccgcctttg |
407 |
Q |
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|||| ||||| | | ||||||||||| || ||||||| |||||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |
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| T |
29597737 |
tacaggaaattgttgccccctcctggtgctgttaatttagtgtcacgatatactgaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 29647259 - 29647639
Alignment:
| Q |
19 |
acttgtcaccaaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgagg |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29647259 |
acttgtcaccaaccttgcagaccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgccgtggttttgtgttctagtgagg |
29647358 |
T |
|
| Q |
119 |
tgaaagttttcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---ca |
215 |
Q |
| |
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||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||| || |
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| T |
29647359 |
tgaaagttttccgtttcggtgataatatttggagaaaaattgcaag-tttactccttataaccttgttgatacccttggccatagtgttgtgaaccaaca |
29647457 |
T |
|
| Q |
216 |
aggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgag |
315 |
Q |
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|
||||||| |||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| ||| ||| |
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| T |
29647458 |
aggagtgtatttgagtggcactgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatattggtaccgag |
29647557 |
T |
|
| Q |
316 |
acatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatgg |
397 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| |
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| T |
29647558 |
acatacaagaaactgctaccccctcctggagcagttaatttagtgccaccatatattgaaccaactattgctactttgatgg |
29647639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 29641941 - 29642312
Alignment:
| Q |
19 |
acttgtcaccaaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgagg |
118 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
29641941 |
acttgtcaccaaccttgcaatttattcaagctcagtttttcattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtgagg |
29642040 |
T |
|
| Q |
119 |
tgaaagttttcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---ca |
215 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| || | ||||||| || |
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| T |
29642041 |
tgaaagttttccatttcggtgataatatttggagaaaaattgcaaattttactccttataaccttgttgatacccttggccatgatggtgtgaaccaaca |
29642140 |
T |
|
| Q |
216 |
aggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgag |
315 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| ||| ||| |
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| T |
29642141 |
aggagtgtatttgagtggcactgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatcttggtaccgag |
29642240 |
T |
|
| Q |
316 |
acatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgct |
387 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||| |
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| T |
29642241 |
acatacaagaaactgctaccccctcctggagcagttaatttagtgccaccatatactgaaccaactattgct |
29642312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 19326431 - 19326262
Alignment:
| Q |
64 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
163 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||| | || | |||||||||||||||||||||| ||| |
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| T |
19326431 |
gggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaa |
19326332 |
T |
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| Q |
164 |
gttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcac |
236 |
Q |
| |
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| ||| |||||| | ||| || || |||||||||| |||| | |||| |||||||| ||||||||||||| |
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| T |
19326331 |
gctttcctccttttgaccatgctgttactcttggctttagtaa---gaacgaaggagtgtatttgagtggcac |
19326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
262 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
324 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
269 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
324 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
262 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
324 |
Q |
| |
|
|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
273 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
324 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
|
|
| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 24254881 - 24254770
Alignment:
| Q |
64 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
163 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | | |||| |||| | ||||||||||| | || || ||||||||||||||||||||| ||| |
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| T |
24254881 |
gggtatgataattcaactggaacttataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaa |
24254782 |
T |
|
| Q |
164 |
gttttactcctt |
175 |
Q |
| |
|
| ||| |||||| |
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|
| T |
24254781 |
ggtttcctcctt |
24254770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
262 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
324 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
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|
| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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