View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11523_low_17 (Length: 390)
Name: NF11523_low_17
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_17 |
 | |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 3984 - 4367
Alignment:
| Q |
1 |
ctcagcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3984 |
ctcagcaacaccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
4083 |
T |
|
| Q |
101 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgattgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgattgtatt |
4183 |
T |
|
| Q |
201 |
gtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataaagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4184 |
gtttttcaaatgacaaggaaatatctcttatttatatacaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataaagcag |
4283 |
T |
|
| Q |
301 |
tggtaaagactaacataaatggttca----aatcatgctgagttggcagggtttcaacaactttctcaaggaacattttctgtg |
380 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4284 |
tggtaaagactaacataaatggttcaaattaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttctgtg |
4367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 13801 - 13425
Alignment:
| Q |
1 |
ctcagcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| ||| ||||||| |||||||||||| |
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|
| T |
13801 |
ctcagcaacaccccagttacctttgtcttcatcgctaggccatgtcttgcgtccgcaatcatcatagtaccctgatctatacttatttttagatgtgaag |
13702 |
T |
|
| Q |
101 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgattgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
13701 |
caattgaaaattgagaagaaacttgtggaagacttgttccgcctattaccacctcccatgatgattaatggctaagttttttgctagaagtgattgtctt |
13602 |
T |
|
| Q |
201 |
gtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataaagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| ||||||||||||||||| |||||| || |
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|
| T |
13601 |
gtttttcaaatgacaaggaaatatctcttatttatatacaatgatagtaatcgaggaggcttgaattgcat--tgtgaaattaagaatctaataaaggag |
13504 |
T |
|
| Q |
301 |
tggtaa--agactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttct |
377 |
Q |
| |
|
|||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
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|
| T |
13503 |
tggtaattagaccaatgtaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaaggcactttttct |
13425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 24129 - 23753
Alignment:
| Q |
1 |
ctcagcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| ||| ||||||| |||||||||||| |
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|
| T |
24129 |
ctcagcaacaccccagttacctttgtcttcatcgctaggccatgtcttgcgtccgcaatcatcatagtaccctgatctatacttatttttagatgtgaag |
24030 |
T |
|
| Q |
101 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgattgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
24029 |
caattgaaaattgagaagaaacttgtggaagacttgttccgcctattaccacctcccatgatgattaatggctaagttttttgctagaagtgattgtctt |
23930 |
T |
|
| Q |
201 |
gtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataaagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
23929 |
gtttttcaaatgacaaggaaatatctcttatttatatacaatgatagtaatcgaggaggcttgaattgcat--tgtgaaattaagaatctaataaaggag |
23832 |
T |
|
| Q |
301 |
tggtaa--agactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttct |
377 |
Q |
| |
|
|||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
|
|
| T |
23831 |
tggtaattagaccaatgtaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaaggcactttttct |
23753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 37883892 - 37883512
Alignment:
| Q |
1 |
ctcagcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37883892 |
ctcagcaacaccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
37883793 |
T |
|
| Q |
101 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgattgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37883792 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgattgtatt |
37883693 |
T |
|
| Q |
201 |
gtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataaagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37883692 |
gtttttcaaatgacaaggaaatatctcttatttatatacaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataaagcag |
37883593 |
T |
|
| Q |
301 |
tggtaaagactaacataaatggttcaaatcatgctga-gttggcagggtttcaacaactttctcaaggaacattttctgtg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||| || ||||||||| |
|
|
| T |
37883592 |
tggtaaagactaacataaatggttcaaatcatgctgactttggcaaggttgtaacaactttcttaaggcactttttctgtg |
37883512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 37870222 - 37870053
Alignment:
| Q |
1 |
ctcagcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
100 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| ||||| ||||| |||| ||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
37870222 |
ctcagcaacaccccagttacctctgtcttcatcgctatgccaaatcttgtgcccgcaatcgtcatagtaccctgctctagacttattcttagatgtgaag |
37870123 |
T |
|
| Q |
101 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatg |
170 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
37870122 |
caactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatg |
37870053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 37862035 - 37861895
Alignment:
| Q |
5 |
gcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaagcaat |
104 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || ||| ||||||||||||||||||||||| |
|
|
| T |
37862035 |
gcaacaccccagttacctttgtcatcatcgctaggccaagtcttgcgcccgcaatcatcatagtaccccgctctatacttattcttagatgtgaagcaac |
37861936 |
T |
|
| Q |
105 |
tgaaaattgagaagaaacctgaagaagacttgttctgccta |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37861935 |
tgaaaattgagaagaaacctgaagaagacttgttttgccta |
37861895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37914789 - 37914551
Alignment:
| Q |
1 |
ctcagcaaccccccagttacctttgtcttcatcgctaggccaagtcttgcgcccacaatcatcatagtatcctgccctagacttattcttagatgtgaag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
37914789 |
ctcagcaacaccccagttacctttgtcttcatcgctaggccatgtcttgcatccgcaatcatcatagtatcctgctctagacttattctttgatttgaag |
37914690 |
T |
|
| Q |
101 |
caattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatg---------gctaagttttttgctagaagc |
191 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||| | ||||| ||||||||||| |
|
|
| T |
37914689 |
attttaaaaattgagaagaaacctgaagaagactt----agcc--ttaccacctcccatgatgattaatgctactgctagataagtgatttgctagaagt |
37914596 |
T |
|
| Q |
192 |
gattgtattgtttttcaaatgacaaggaaatatctcttatttata |
236 |
Q |
| |
|
|||||| ||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37914595 |
gattgtcttggtttttaaatgacaaggtaatatctcttatttata |
37914551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 37914533 - 37914455
Alignment:
| Q |
272 |
agtgtgaaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgagttggcagggttt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37914533 |
agtgtgaaattaagaatctgataaagcagtggtaaagactaacgtaaatggttcaaatcatgctgagttggcaaggttt |
37914455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 37861756 - 37861655
Alignment:
| Q |
278 |
aaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttct |
377 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||| |
|
|
| T |
37861756 |
aaattaagaatctaataaaggagtggtaaagactaacctaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaa-gcacattttct |
37861658 |
T |
|
| Q |
378 |
gtg |
380 |
Q |
| |
|
||| |
|
|
| T |
37861657 |
gtg |
37861655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 37869937 - 37869850
Alignment:
| Q |
272 |
agtgtgaaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgagttggcagggtttcaacaacttt |
360 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
37869937 |
agtgttaaattaagaatctg-taaagcagtggtaaagaccaatgtaaatggttcaaatcaagctgacttggcagggttgtaacaacttt |
37869850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 37861836 - 37861775
Alignment:
| Q |
177 |
ttttttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttatata |
238 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
37861836 |
ttttttgctagaaatgattgtcttggttttcaaatgacaatgtaatatctcttatttatata |
37861775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 37870014 - 37869955
Alignment:
| Q |
177 |
ttttttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata |
236 |
Q |
| |
|
|||||||||||||| | |||| ||| |||| ||||||||| | ||||||||||||||||| |
|
|
| T |
37870014 |
ttttttgctagaagtggttgtcttggtttttaaatgacaatgtaatatctcttatttata |
37869955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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