View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_18 (Length: 385)
Name: NF11523_low_18
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7950236 - 7949962
Alignment:
| Q |
1 |
tttggtcatgagattgatttctttatgaaggactgtataatggtgttttttcacatagatgctacatctattatgactacctactaccattaactgtgac |
100 |
Q |
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| T |
7950236 |
tttggtca-gagattgatttccttatgaaggactgtataatggtgttttttcacatagatgctacatctattatgactacctactaccattaactgtgac |
7950138 |
T |
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| Q |
101 |
ttgataaagccacacaattattagcaacctcttcatccattaaatggttagcttacttatgagttatgatttgtaattatgtgaaacaaaattgggctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7950137 |
ttgataaagccacacaattattagcaacctcttcatccattaaatggttagcttacttatgagttatgatttgtaattatgtgaaacaagattgggctaa |
7950038 |
T |
|
| Q |
201 |
agaacgtgtagtctcaatctaaaattattggcttgtttgtctttgaccatgtatgaaaaattttgtataattagaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7950037 |
agaacgtgtagtctcaatctaaaattattggcttgtttgtctttgaccatgtatgaaaaactttgtataattagaa |
7949962 |
T |
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