View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_19 (Length: 374)
Name: NF11523_low_19
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 30209607 - 30209971
Alignment:
| Q |
16 |
acaaattactcaaaactaaaacacttgttgatgagactatactattgtgtgtgttgggttttggtcacacattcactgttttagtcagggaaaagaaaac |
115 |
Q |
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| T |
30209607 |
acaaattactcaaaactaaaacacttgttgatgagactatactattttgtgtgttgggttttggtcacacattcactgttttagtcagggaaaagaaaac |
30209706 |
T |
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| Q |
116 |
aacatactacattatt---ccatcaaaaatataaatataagaaatattacattattattacgt------acgttacatgcattcatacatgatgtatcaa |
206 |
Q |
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| T |
30209707 |
aacatactacattattattccatcaaaaatataaatataagaaatattacattattattacgttacgttacgttacatgcattcatacatgatgtatcaa |
30209806 |
T |
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| Q |
207 |
ctgagccaaagagacttttgcttcatgtgagaacctttctatatatatagtatttgtttcttttgataaaaatgaaagatattcctttaattgaaatttc |
306 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
30209807 |
ctgagccaaagggacttttgcttcatgtgagaacctttctatatatatagtatttgtttcttttgataaaattgaaagttattcctttaattgaaatttc |
30209906 |
T |
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| Q |
307 |
aatttcagttttggtttggatttttgtgaatcaataccttacttagtactacttcatctcactcg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30209907 |
aatttcagttttggtttggatttttgtgaatcaataccttacttagtactacttcaattcactcg |
30209971 |
T |
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