View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11523_low_22 (Length: 352)
Name: NF11523_low_22
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 35617611 - 35617929
Alignment:
| Q |
17 |
cacagacttctgcaacggtggagtctcatgcaaatctgattcaatcacttgatgcttcctcgaatcatagcaaggaagaaataaacgacggaagggattt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35617611 |
cacagacttctgcaacggtggagtctcatgcaaatctgattcaatcacttgatgcttcctcgaatcatagcaaggaagaaataaacgacagaagggattt |
35617710 |
T |
|
| Q |
117 |
tgaggtaactgagagagcaaggaatgacaagaatatggatgcatgtaagaaaaatgatgaaagtgctactgtgaaatcaacagcaacaaaaacagtcaag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35617711 |
tgaggtaactgagagagcaaggaatgacaagaatatggatgcatgtaagaaaaatgatgaaagtgctactgtgaaatcaacagcaacaaaagcagtcaag |
35617810 |
T |
|
| Q |
217 |
tttccagtttacgatactgggatattggaggaggaagtaacagccgaaggcgaatataaagtgcaggagaagagtattgtgcaggaagatcttaaacatg |
316 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35617811 |
tttccggtttgcgatactgggataatggaggaggaagtaacagccgaaggcgaatataaagtgcaggagaagagtattgtgaaggaagatcttaaacatg |
35617910 |
T |
|
| Q |
317 |
gtactagtactactgatgt |
335 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35617911 |
gtactagtactactgatgt |
35617929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University