View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_24 (Length: 335)
Name: NF11523_low_24
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 43 - 277
Target Start/End: Complemental strand, 47948288 - 47948054
Alignment:
| Q |
43 |
tgtgctttataagtttaaatatttcaatttttgactagaaatctatttgaaaaactgtaaaatgatcaatcataatattttattataaattagaatggat |
142 |
Q |
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| T |
47948288 |
tgtgctttataagtttaaatatttcaatttttgactagaaatctatttgaaaaactgtaaaatgatcaatcataatattttattataaattagaatggat |
47948189 |
T |
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| Q |
143 |
taaattaattagtacttcctcctgtccatgttatnnnnnnnnttactttttaaattcattgaatgattgatagctgatgtatctataagataagattaga |
242 |
Q |
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| T |
47948188 |
taaattaattagtacttcctccggtccatgttataaaaaaaattactttttaaattcattgaatgattgatagctgatgtatctataagataagattaga |
47948089 |
T |
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| Q |
243 |
tacataaactattcaatgaatctaaaaaattgttg |
277 |
Q |
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| T |
47948088 |
tacataaactattcaatgaatctaaaaaattgttg |
47948054 |
T |
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