View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_28 (Length: 303)
Name: NF11523_low_28
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_28 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 3742 - 4016
Alignment:
| Q |
20 |
ggcaatgcaacaattgatgattattagttgaacttatgaacttatagtagaagcaattaatatttacgtaataaatattaatctagagaactaaatcaac |
119 |
Q |
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| T |
3742 |
ggcaatgcaacaattgatgattattagttgaacttatgaacttatagtagaagcaattaatatttacgtaataaatattaatctagagaactaaatcaac |
3841 |
T |
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| Q |
120 |
aatgaaatatatgcccatcaggattgatagtattatctcattatgcattctaggacgctggatcaacttgataacgtttggattctgagatgcgattctt |
219 |
Q |
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| T |
3842 |
aatgaaatatatgcccatcgggattgatagtattatctcattatgcattctaggacgctggatcaacttgataacgttcggattctgagatgcgattctt |
3941 |
T |
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| Q |
220 |
gtatctgcggatgaaatcttcagctctcctgttaatattgggctcagcaacaccccagttacctttgtcttcatc |
294 |
Q |
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| T |
3942 |
gtatctgcggatgaaatcttcagctctcctgttaatattgggctcagcaacaccccagttacctttgtcttcatc |
4016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 13884 - 13769
Alignment:
| Q |
179 |
ggatcaacttgataacgtttggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatattgggctcagcaacaccccagt |
278 |
Q |
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| T |
13884 |
ggatcaacttgatagctatcggattctgaaatgcgattcttgcatttgcggatgaaatcttcagctctcctgttaatgttaggctcagcaacaccccagt |
13785 |
T |
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| Q |
279 |
tacctttgtcttcatc |
294 |
Q |
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| T |
13784 |
tacctttgtcttcatc |
13769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 24212 - 24097
Alignment:
| Q |
179 |
ggatcaacttgataacgtttggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatattgggctcagcaacaccccagt |
278 |
Q |
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| T |
24212 |
ggatcaacttgatagctatcggattctgaaatgcgattcttgcatttgcggatgaaatcttcagctctcctgttaatgttaggctcagcaacaccccagt |
24113 |
T |
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| Q |
279 |
tacctttgtcttcatc |
294 |
Q |
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| T |
24112 |
tacctttgtcttcatc |
24097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 37914892 - 37914757
Alignment:
| Q |
159 |
attatgcattctaggacgctggatcaacttgataacgtttggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatatt |
258 |
Q |
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||||||||||||||| || |||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
37914892 |
attatgcattctaggcagccggatcaacttgatagcgttcggattctgatatgcgattcttgtatttgcggatgaaatcttcagctctgctgttaatatt |
37914793 |
T |
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| Q |
259 |
gggctcagcaacaccccagttacctttgtcttcatc |
294 |
Q |
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| T |
37914792 |
gggctcagcaacaccccagttacctttgtcttcatc |
37914757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 37883995 - 37883860
Alignment:
| Q |
159 |
attatgcattctaggacgctggatcaacttgataacgtttggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatatt |
258 |
Q |
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||||||||||||||| || |||||||||||||| | || ||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
37883995 |
attatgcattctaggcagccggatcaacttgatagcattcggattctgatatgtgattcttgtatttgcggatgaaatctttagctctcctgttaatatt |
37883896 |
T |
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| Q |
259 |
gggctcagcaacaccccagttacctttgtcttcatc |
294 |
Q |
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| T |
37883895 |
gggctcagcaacaccccagttacctttgtcttcatc |
37883860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 37862122 - 37862007
Alignment:
| Q |
179 |
ggatcaacttgataacgtttggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatattgggctcagcaacaccccagt |
278 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
37862122 |
ggatcaacttgataacgttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctcctgttaatgttaggctctgcaacaccccagt |
37862023 |
T |
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| Q |
279 |
tacctttgtcttcatc |
294 |
Q |
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| T |
37862022 |
tacctttgtcatcatc |
37862007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 176 - 294
Target Start/End: Complemental strand, 37870308 - 37870190
Alignment:
| Q |
176 |
gctggatcaacttgataacgtttggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatattgggctcagcaacacccc |
275 |
Q |
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| T |
37870308 |
gctggatcaacttgatagcgctcggattctgaaactcgattcttgtatttgcggatgaaatcttcagctctcctgttaatgttaggctcagcaacacccc |
37870209 |
T |
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| Q |
276 |
agttacctttgtcttcatc |
294 |
Q |
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|||||||| |||||||||| |
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| T |
37870208 |
agttacctctgtcttcatc |
37870190 |
T |
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