View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_3 (Length: 678)
Name: NF11523_low_3
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 343 - 668
Target Start/End: Original strand, 1396224 - 1396542
Alignment:
| Q |
343 |
cagtaatggttcgtgcccctaattagttgaaatgagtttacagtctcagtttctagacaatatttttgttagccatccgaaagatgatgaggtgatttcg |
442 |
Q |
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| T |
1396224 |
cagtaatggttcctgaccctaattagttgagatgagtttacagtctcagtttctagacaatatttttgtgggccatccgaaagatgatgaggtgatttcg |
1396323 |
T |
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| Q |
443 |
tgcactgtttgtttcgacaagaagatgcacgacccaagtggtgatggcaatatcagcttgctccttagacttgactttccattttctgggtataatgtgg |
542 |
Q |
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| T |
1396324 |
tgcaatgtttgtttcgacaagaagatgcacgacccaagtggtgatggcaatatcagcttgctcctta-----gactttccattttctgggtataatgtgg |
1396418 |
T |
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| Q |
543 |
ggacattttccatttttaggatttcccacttatattttgcagataatacactccttttgggcgagaaaaattggggtaatattagagctataaaggcaaa |
642 |
Q |
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| T |
1396419 |
ggacattttccattattaggatttcccacttatattttgcatataatacactccttttgggcgagaaaaattggggtaattttagagc--taaaggcaaa |
1396516 |
T |
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| Q |
643 |
tttgatcctctttgaaatcatctctg |
668 |
Q |
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| T |
1396517 |
ttttatcctctttgaaatcatctctg |
1396542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 1395891 - 1396209
Alignment:
| Q |
19 |
tggacttctgaattcttcaacaaggtgttgttagctaagggtacttttttgagaatggatcttcacatgcatggataataaaacatgtctcgattg---- |
114 |
Q |
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| T |
1395891 |
tggacttctgaattcttcaacaaggtgttgttagctaagggtacttttttgagaatggatcttcacatgcatggataataaaacatgtctcgattgcgca |
1395990 |
T |
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| Q |
115 |
----------tgaagacttaatgttccagga---aagtaatcatgttgtacttagcaaatgaggg-----------agctaacaaccattt--------- |
181 |
Q |
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| T |
1395991 |
aacgtatgcatgaaaacttaatgttccaggaggaaagtaatcatgttgtacttagcaaatgagggggagatgagggagctaacaaccatttgtacaacac |
1396090 |
T |
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| Q |
182 |
---tagtcgagttacttgttcgacaactaattctgaatgtcgctcgataggaattagtggtaatttattgatataggaagtgtcccaagtaagtttattg |
278 |
Q |
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| T |
1396091 |
tattcgtcgagttacttgttcgacaactaattctgaatgtggctcgataggaattagtggtaatttcttgatataggaagtgtcccaagtaagtttattg |
1396190 |
T |
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| Q |
279 |
tgaaggaaaatgcactttc |
297 |
Q |
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| T |
1396191 |
tgaaggaaaatgcactttc |
1396209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 648
Target Start/End: Complemental strand, 17352784 - 17352686
Alignment:
| Q |
550 |
ttccatttttaggatttcccacttatattttgcagataatacactccttttgggcgagaaaaattggggtaatattagagctataaaggcaaatttgat |
648 |
Q |
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| T |
17352784 |
ttccattttctggatttcccacctacaatttgtggatgatacactccttttggccgagaaaattggggttaatactagagctataaaggcgaatttgat |
17352686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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