View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_30 (Length: 267)
Name: NF11523_low_30
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 35644263 - 35644042
Alignment:
| Q |
11 |
gaagaagagtcgtatgagattaagacgacactttgaagggagtatgtatgcacatgaggtttggaaccatatacnnnnnnnnngaatcggaacaaaaaca |
110 |
Q |
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| T |
35644263 |
gaagaagagtcgtataagattaagacgacactttgaagggagtata----cacatgaggtttggaaccattt----ttttttttaatcaggacaaaaacc |
35644172 |
T |
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| Q |
111 |
atatactaaaatccgtaaaatataatccaaagtttgacatagatagtggagtgcatgtgaatagnnnnnnnnattggtgccacttcatcgtgagtaaatt |
210 |
Q |
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| T |
35644171 |
atatactaaaatccgtaaaatataatctaaagtttgacatagatagtggagtacatgtgaata-atttttttattggtgccacttcattgtgagtaaatt |
35644073 |
T |
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| Q |
211 |
atacatattttttcaaagccagtctaatttt |
241 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
35644072 |
atacatattttctcaaagccagtctaatttt |
35644042 |
T |
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