View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11523_low_32 (Length: 250)
Name: NF11523_low_32
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_32 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 27098719 - 27098957
Alignment:
| Q |
12 |
atgaagtaattgaaattcttcacacacactactgagtaagagaggaattagcattaccagtagaaggatcagaagaatttgagaaacaagaattcttatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098719 |
atgaagtaattgaaattcttcacacacactactgagtaagagaggaattagcattaccagtagaaggatcagaagaatttgagaaacaagaattcttatg |
27098818 |
T |
|
| Q |
112 |
attatgcatccaaaccttaaaaacttgtctactcacaccaacactttcacaaaacctttcaatctcttcatcaagttcttttctctgcaatttccatcct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098819 |
attatgcatccaaaccttaaaaacttgtctactcacaccaacactttcacaaaacctttcaatctcttcatcaagttcttttctctgcaatttccatcct |
27098918 |
T |
|
| Q |
212 |
aacttctcagcaaatcccatcatcttctccttctgatcc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098919 |
aacttctcagcaaatcccatcatcttctccttctgatcc |
27098957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University