View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_37 (Length: 211)
Name: NF11523_low_37
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 4167352 - 4167272
Alignment:
| Q |
113 |
attgtaagtgacatacatcagttacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt |
193 |
Q |
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| T |
4167352 |
attgtaagtgacatacatcagttacgaattagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt |
4167272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 4167547 - 4167474
Alignment:
| Q |
42 |
gtaatattatagtgtgctaataataatctgcgttacatgcaggacttgatataaaatgaaattcatcgagcatt |
115 |
Q |
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| T |
4167547 |
gtaatattatagtgtgctaataataatctgcgttacatgcaggacttgatataaaatgaaattcatcgagcatt |
4167474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 4151586 - 4151503
Alignment:
| Q |
113 |
attgtaagtgacatacatcagtt---acgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt |
193 |
Q |
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| T |
4151586 |
attgtaagtgacagacatcagtttatacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaatt |
4151503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 7021325 - 7021282
Alignment:
| Q |
139 |
aaatagttggatatagcagacgatgtaatctacatgataccatg |
182 |
Q |
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| T |
7021325 |
aaatagttggatacagcagacgatgtaatctatatgataccatg |
7021282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 4152241 - 4152183
Alignment:
| Q |
62 |
taataatctgcgttacatgcaggacttgata-----taaaatgaaattcatcgagcatt |
115 |
Q |
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| T |
4152241 |
taataatctgcgttacatgcaggacttgatagtagctaaaatgaaattcatcaagcatt |
4152183 |
T |
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