View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11523_low_8 (Length: 557)
Name: NF11523_low_8
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11523_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 23 - 546
Target Start/End: Original strand, 329067 - 329588
Alignment:
| Q |
23 |
gtctttgatggaatacatgaggtatcggaagtggaaccactaaatagaagcactttcactaaacggaggtcccataatatcaatgattttgtcgtaacac |
122 |
Q |
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| T |
329067 |
gtctttgatggaatacatgaggtatcggaagtggaaccactaaatagaagcactttcactaaacggaggtcccataatatcaatgattttgtcgtaacac |
329166 |
T |
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| Q |
123 |
attccaaaaccttgtttaattaccctggcttattgacatgctggcaataattacattcaaaattaatcttgcagagctgacatttggtcatttggcataa |
222 |
Q |
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| T |
329167 |
attccaaaaccttgtttaattaccctggcttattgacatgctggcaataatgacattcaaaattaatcttgcagagctgacatttggtcatttggcataa |
329266 |
T |
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| Q |
223 |
ctgcattggagcttgcccatggccatgctcctttctcaaaatatccaccattgaaggtgtgtgtgcacatactatcatagtatttgctataagcactcaa |
322 |
Q |
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| T |
329267 |
ctgcattggagcttgcccatggccatgctcctttctcaaaatatccaccattgaaggtgtgtgtgcacatactatcatagtatttgctataagcactcaa |
329366 |
T |
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| Q |
323 |
aattttattccatttttctttgtttaatttcataataattaaactttccaggtactgcttatgactttgcaaaatgcacctccaggccttgactacgaaa |
422 |
Q |
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| T |
329367 |
aattttatcccatttttc--tgtttaatttcataataattaaactttccaggtactgcttatgactttgcaaaatgcacctccaggccttgactacgaaa |
329464 |
T |
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| Q |
423 |
gggacaagaagttctctaaggtcagcccagttcagtttgattccatcatttgctgattgctcctgtaagcaaattaaacccttctatgatttttactagc |
522 |
Q |
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| T |
329465 |
gggacaagaagttctctaaggtcagcccagttcagtttgattccatcatttgctgattgctcctgtaagcaaactaaacccttctatgatttttactagc |
329564 |
T |
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| Q |
523 |
taatatctttattccttttttctt |
546 |
Q |
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| T |
329565 |
taatatctttattccttttttctt |
329588 |
T |
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Back To:
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 1202405 - 1202352
Alignment:
| Q |
378 |
tgcttatgactttgcaaaatgcacctccaggccttgactacgaaagggacaaga |
431 |
Q |
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| T |
1202405 |
tgcttatgactttgcagaatgcccctccaggtcttgattatgaaagagacaaga |
1202352 |
T |
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