View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11523_low_9 (Length: 509)

Name: NF11523_low_9
Description: NF11523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11523_low_9
NF11523_low_9
[»] chr3 (14 HSPs)
chr3 (397-496)||(20751419-20751518)
chr3 (79-254)||(32607274-32607451)
chr3 (94-260)||(46934443-46934611)
chr3 (79-204)||(25631618-25631745)
chr3 (79-254)||(4178371-4178547)
chr3 (79-190)||(14464377-14464492)
chr3 (79-258)||(35499290-35499474)
chr3 (79-190)||(49552316-49552428)
chr3 (63-126)||(25939471-25939532)
chr3 (79-254)||(38855128-38855304)
chr3 (79-254)||(12115900-12116079)
chr3 (46-89)||(27856137-27856180)
chr3 (49-126)||(53426859-53426934)
chr3 (154-254)||(36905928-36906027)
[»] chr5 (11 HSPs)
chr5 (91-258)||(36344591-36344761)
chr5 (79-190)||(27266951-27267065)
chr5 (79-254)||(30371536-30371713)
chr5 (94-254)||(34881522-34881683)
chr5 (79-204)||(18677557-18677684)
chr5 (155-254)||(11192178-11192277)
chr5 (79-248)||(7241600-7241770)
chr5 (79-248)||(7246776-7246946)
chr5 (170-232)||(11875290-11875352)
chr5 (174-254)||(1697058-1697138)
chr5 (63-126)||(17326169-17326230)
[»] chr1 (18 HSPs)
chr1 (79-254)||(51871678-51871852)
chr1 (90-235)||(38520634-38520783)
chr1 (155-254)||(45805979-45806078)
chr1 (144-254)||(7342535-7342644)
chr1 (84-192)||(9172362-9172472)
chr1 (84-192)||(9180344-9180454)
chr1 (146-254)||(33291580-33291687)
chr1 (170-252)||(44637235-44637318)
chr1 (79-260)||(40646495-40646678)
chr1 (79-192)||(51868737-51868852)
chr1 (77-241)||(25406374-25406539)
chr1 (63-127)||(27469700-27469762)
chr1 (67-126)||(23791120-23791179)
chr1 (110-255)||(5324679-5324826)
chr1 (90-190)||(27872615-27872719)
chr1 (50-126)||(33177576-33177650)
chr1 (25-89)||(44543231-44543295)
chr1 (167-254)||(50166281-50166366)
[»] chr7 (10 HSPs)
chr7 (79-257)||(22927962-22928141)
chr7 (79-260)||(46821817-46822000)
chr7 (79-253)||(20116393-20116567)
chr7 (79-254)||(26492174-26492350)
chr7 (79-254)||(42311089-42311265)
chr7 (33-89)||(5348667-5348723)
chr7 (79-254)||(26583523-26583699)
chr7 (94-253)||(35667337-35667497)
chr7 (79-124)||(6558817-6558862)
chr7 (95-225)||(31235898-31236032)
[»] chr6 (5 HSPs)
chr6 (94-258)||(12652745-12652911)
chr6 (79-254)||(25064044-25064221)
chr6 (85-254)||(8496774-8496946)
chr6 (79-191)||(17237377-17237490)
chr6 (79-204)||(33740670-33740796)
[»] chr2 (7 HSPs)
chr2 (79-260)||(36233812-36233997)
chr2 (91-254)||(2808573-2808738)
chr2 (79-190)||(40660024-40660134)
chr2 (79-204)||(6173495-6173621)
chr2 (146-204)||(459435-459492)
chr2 (49-126)||(25623023-25623098)
chr2 (79-141)||(32680673-32680735)
[»] chr4 (13 HSPs)
chr4 (154-254)||(10359715-10359815)
chr4 (94-254)||(34024542-34024704)
chr4 (79-254)||(1531727-1531905)
chr4 (146-254)||(9283732-9283839)
chr4 (146-206)||(12265323-12265383)
chr4 (79-254)||(25273696-25273880)
chr4 (94-260)||(10389859-10390027)
chr4 (79-204)||(38706802-38706928)
chr4 (156-232)||(21089995-21090071)
chr4 (91-141)||(8009462-8009512)
chr4 (94-189)||(43154127-43154224)
chr4 (155-248)||(44947230-44947322)
chr4 (167-235)||(49072940-49073008)
[»] chr8 (12 HSPs)
chr8 (91-258)||(44100034-44100204)
chr8 (79-254)||(9619449-9619626)
chr8 (94-260)||(11196702-11196868)
chr8 (79-235)||(9072552-9072710)
chr8 (151-241)||(11725511-11725600)
chr8 (95-206)||(28239696-28239811)
chr8 (79-251)||(43890216-43890390)
chr8 (94-254)||(32724595-32724758)
chr8 (79-204)||(44577902-44578028)
chr8 (146-191)||(15597328-15597373)
chr8 (79-191)||(42448119-42448234)
chr8 (25-89)||(1236764-1236828)
[»] scaffold0003 (1 HSPs)
scaffold0003 (108-249)||(361916-362057)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 397 - 496
Target Start/End: Complemental strand, 20751518 - 20751419
Alignment:
Q  397 ctttctatatcatctcatttcctttttggaatttaaacagaccattaaagaatatatgaagtaaaatgtttattggattgttgtgatcagagtgacattt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  20751518 ctttctatatcatctcatttcctttttggaatttaaacagaccattaaagaatatatgaagtaaaatgtttattggattgttgtgatgagaatgacattt 20751419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 32607451 - 32607274
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaata--gagaacat-atgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| |||||||||| |||||||| | | ||||||  ||||| || |||| ||||||| |||| || |||| ||||    
T  32607451 gaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaatgatgaagaggggt-atttcaggtcaagaatt 32607353  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||||||||| |||||||||| |  |||||| ||| |||||| |||||| || ||||| ||||||||||||    
T  32607352 gacccaaaaccaccccctcaatgaagaaattgtaagagaaaatctagagagagaaaactagggccggcttgttggagag 32607274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 46934611 - 46934443
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    ||||| || |||| |||||||||| |||||||| | | ||||||||||   | | |||| |||||||||||| || ||||||||||||  ||||||||||    
T  46934611 aaaaacctggatctatgtgaaaatcacttatttagattgaaatagagagagaaagatgaagaggggtgatttcaggtcaaaaattgaccaaaaaccaccc 46934512  T
Q  191 ccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagagga 260  Q
    | | |||||||||| || |||||| ||  |||||| ||||||||| |||||||||||||||||| |||||    
T  46934511 c-tcaatgaagaaagtagaagagaaaacctagagagagaaaattagggccgacttgttggagagtgagga 46934443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 25631618 - 25631745
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||| | | |||||||||   || | |||  ||||| |||||| || |||||||||    
T  25631618 gaaatcacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatggagagggatgattttaggtcaaaaatt 25631717  T
Q  176 gactcaaaaccacccccttaatgaagaaa 204  Q
    ||| |||||||| ||||| ||||||||||    
T  25631718 gacccaaaacca-cccctcaatgaagaaa 25631745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 4178547 - 4178371
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||  || ||||||| |||||||| | | ||||||||||   | | |||| || ||||||||| || |||| ||||    
T  4178547 gaaatcacaaagaa-aaaaagctagatttatctgaaaatcacttatttagattgaaatagagagaaaaagatgaagatgggtgattttaggtcaagaatt 4178449  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||| ||||| ||||||||||    |||| | ||  |||||| |||||| || ||||||||||||||||||    
T  4178448 gacccaaaacca-cccctcaatgaagaaacagtaagaaaaaacctagagagagaaaactagggccgacttgttggagag 4178371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 14464492 - 14464377
Alignment:
Q  79 gaaatcacaaagaagaaaaaac-tagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaat 174  Q
    |||||||||||||| ||||||| |||||| |||||||||| |||||||| | | |||||| ||   || | ||||  ||||||||||| || |||| |||    
T  14464492 gaaatcacaaagaaaaaaaaacttagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaataggggtgatttcaggtcaagaat 14464393  T
Q  175 tgactcaaaaccaccc 190  Q
    |||| |||||||||||    
T  14464392 tgacccaaaaccaccc 14464377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 35499290 - 35499474
Alignment:
Q  79 gaaatcacaaagaagaaaaaa--ctagatcgatgtgaaaataacttattttgttagaaatagagaacatatgatga----ggggtgatttaagttcaaaa 172  Q
    ||||| |||||||| ||||||  ||||||| |||||||||| |||||||| | | |||||| |||  | | |||||    |||||||||| || | ||||    
T  35499290 gaaattacaaagaaaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagagggggtgatttcaggtaaaaa 35499389  T
Q  173 attgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagag 258  Q
    ||||||  ||||||||||| | |||||||||  |  || ||| |||||||||  ||||||||| | ||||||| ||||||||||||    
T  35499390 attgaccaaaaaccacccc-tcaatgaagaatttgtaaaagaaaatttagagggagaaaattaagaccgacttattggagagagag 35499474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 49552316 - 49552428
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagagaacatatgatga---ggggtgatttaagttcaaaaatt 175  Q
    ||||||||||||||  |||| ||||||  |||||||| | |||||||| | | ||||||||||| | |||||||   |||||||||| || |||| ||||    
T  49552316 gaaatcacaaagaa--aaaacctagattaatgtgaaattcacttatttagattgaaatagagaaaaaatgatgaagaggggtgatttcaggtcaagaatt 49552413  T
Q  176 gactcaaaaccaccc 190  Q
    ||| |||||||||||    
T  49552414 gacccaaaaccaccc 49552428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 25939471 - 25939532
Alignment:
Q  63 gtcgcactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattt 126  Q
    |||||||||||||||||||||||| |  ||||||||||   || ||||||||||||||||||||    
T  25939471 gtcgcactgagacaacgaaatcacga--aagaaaaaacagaatagatgtgaaaataacttattt 25939532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 38855128 - 38855304
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||| | | || ||||||   || | |||| ||||||||||||  | |||| || |    
T  38855128 gaaatcacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgatatagagagaaaaagatgaagaggggtgattttcggtcaagaa-t 38855226  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||| ||||| ||||||||||    |||||| ||  |||||| |||||| || || || ||||||||||||    
T  38855227 gacccaaaacca-cccctcaatgaagaaatagtaagagaaaacctagagagagaaaactagggtcggcttgttggagag 38855304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 12116079 - 12115900
Alignment:
Q  79 gaaatcacaaagaagaaaaaa--ctagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaa 173  Q
    ||||| |||||||| ||||||  |||||||  ||||||||| |||||||| | | |||||| |||   | | |||| ||| | |||||| || |||| ||    
T  12116079 gaaattacaaagaaaaaaaaaacctagatctttgtgaaaatcacttatttagattgaaataaagaggaaaagatgaagagagatgatttcaggtcaagaa 12115980  T
Q  174 ttgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    |||||||||||||| ||||| |||||||||| |  || ||| ||  |||||| |||||| ||  |||||||||||||||||    
T  12115979 ttgactcaaaacca-cccctcaatgaagaaattgtaaaagaaaacctagagagagaaaactagagccgacttgttggagag 12115900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 27856180 - 27856137
Alignment:
Q  46 acaacgaacaacataatgtcgcactgagacaacgaaatcacaaa 89  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||    
T  27856180 acaacgaacaacacaatgtcgcactcagacgacgaaatcacaaa 27856137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 53426934 - 53426859
Alignment:
Q  49 acgaacaacataatgtcgcactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattt 126  Q
    |||||||||| || |||||||| |||| ||||||||||||  |||||||||  | || ||||||||||| ||||||||    
T  53426934 acgaacaacaaaacgtcgcactaagacgacgaaatcacaa--aagaaaaaatgaaatagatgtgaaaatcacttattt 53426859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 36906027 - 36905928
Alignment:
Q  154 gggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggaga 253  Q
    ||||||||| || |||| ||||||| |||||||| ||  | |||||||||| |  |||||| ||  |||||| ||||||||| |||||||||||| ||||    
T  36906027 gggtgatttcaggtcaagaattgacccaaaaccatcca-tcaatgaagaaattgtaagagaaaacctagagagagaaaattagggccgacttgttagaga 36905929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 36344591 - 36344761
Alignment:
Q  91 aagaaaaaact-agatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaacc 186  Q
    ||||||||||| ||||| ||||||||||||||||||| | | |||||| |||   | | |||| |||||||||||| || |||| ||| |||||||||||    
T  36344591 aagaaaaaacttagatccatgtgaaaataacttatttagattgaaatatagagaaaaagatgaagaggggtgattttaggtcaagaatcgactcaaaacc 36344690  T
Q  187 acccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagag 258  Q
    ||||| | |||||||||| |  |||||| ||| |||||| | ||||||| ||||||||||||||||||||||    
T  36344691 acccc-tcaatgaagaaattggaagagaaaatctagagagaaaaaattagggccgacttgttggagagagag 36344761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 27266951 - 27267065
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||| | | |||||||||   || |||||| |||||||||||| || |||| ||||    
T  27266951 gaaatcacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaatatgaagaggggtgatttcaggtcaagaatt 27267050  T
Q  176 gactcaaaaccaccc 190  Q
    ||| |||||||||||    
T  27267051 gacccaaaaccaccc 27267065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 30371713 - 30371536
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| |||||||||| |||||||| | | |||||| |||   | | |||| |||||||||||| || ||||| |||    
T  30371713 gaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgatttcaggtcaaatatt 30371614  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||| ||||| |||||||||| |  |||||| ||  |||| | |||||| || ||||||||||||||||||    
T  30371613 gacccaaaacca-cccctcaatgaagaaattgtaagagaaaacctagatagagaaaactagggccgacttgttggagag 30371536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Complemental strand, 34881683 - 34881522
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaat--agagaacatatgatgaggggtgatttaagttcaaaaattgactcaaaaccacccc 191  Q
    ||||||||||||| |||||||||| |||||||| | | |||||  |||||| | |||| ||| |||||||| || |||| ||||||| || ||||| |||    
T  34881683 aaaaaactagatctatgtgaaaatcacttatttagattgaaatagagagaaaagatgaagagaggtgatttcaggtcaagaattgacccagaacca-ccc 34881585  T
Q  192 cttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    || |||| ||||| |  |||||| ||  | |||| |||||| || ||||||||||||||||||    
T  34881584 ctcaatggagaaactgtaagagaaaacctggagagagaaaactagggccgacttgttggagag 34881522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 18677557 - 18677684
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||| | |  ||||||||   || | |||| ||||| |||||| || |||| ||||    
T  18677557 gaaatcacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattaaaatagagagaaaaagatgaagagggatgatttcagatcaataatt 18677656  T
Q  176 gactcaaaaccacccccttaatgaagaaa 204  Q
    ||| |||||||| ||||| ||||||||||    
T  18677657 gacccaaaacca-cccctcaatgaagaaa 18677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 11192277 - 11192178
Alignment:
Q  155 ggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    |||||||| || |||||||||||| |||||||||||| | ||||| || |||| |||||| ||  |||||| ||| || || | ||||||||||||||||    
T  11192277 ggtgatttcaggtcaaaaattgacccaaaaccaccccttcaatgatgagaatagaagagagaaactagagaaagagaactaggaccgacttgttggagag 11192178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 7241770 - 7241600
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||| | |||||||| | | ||||||||||   | | |||| |||||||| ||| || | || ||||    
T  7241770 gaaatcacaaagaa-aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtggtttcaggttaagaatt 7241672  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgtt 248  Q
    ||| |||||||||||||  ||||||||||    |||||| ||  |||||| ||||||||| ||||| ||||||    
T  7241671 gacccaaaaccaccccc-caatgaagaaacgggaagagaaaacctagagagagaaaattagggccggcttgtt 7241600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 7246946 - 7246776
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||| | |||||||| | | ||||||||||   | | |||| |||||||| ||| || | || ||||    
T  7246946 gaaatcacaaagaa-aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtggtttcaggttaagaatt 7246848  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgtt 248  Q
    ||| |||||||||||||  ||||||||||    |||||| ||  |||||| ||||||||| ||||| ||||||    
T  7246847 gacccaaaaccaccccc-caatgaagaaacgggaagagaaaacctagagagagaaaattagggccggcttgtt 7246776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 11875352 - 11875290
Alignment:
Q  170 aaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaa 232  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||  ||| |||||| ||||||    
T  11875352 aaaaatgacccaaaaccaccccctaaatgaagaaaatgaaagagggaatctagagagagaaaa 11875290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 1697058 - 1697138
Alignment:
Q  174 ttgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||||||||||| ||| |||| ||||||||||||| |||||| || || || | |||||| |  || |||||||||||||||    
T  1697058 ttgactcaaaatcactccctcaatgaagaaaatagaagagagaactttgaaagagaaaaattgggtcgacttgttggagag 1697138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 17326169 - 17326230
Alignment:
Q  63 gtcgcactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattt 126  Q
    |||||||| |||||||||||||||||  ||| |||| |||  ||||||||||||| ||||||||    
T  17326169 gtcgcactaagacaacgaaatcacaa--aaggaaaacctaattcgatgtgaaaatcacttattt 17326230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 51871852 - 51871678
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||||||||||||  |||| ||||||| |||||||| | |||||||| | | ||||||||||   | | |||| |||||||||||| || |||| ||||    
T  51871852 gaaatcacaaagaa--aaaagctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtgattttaggtcaagaatt 51871755  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||||||||  ||||||||||  | |||||| ||  |||||| ||||||||| ||||||||||||||||||    
T  51871754 gacccaaaaccaccccc--aatgaagaaacgagaagagaaaacctagagagagaaaattagggccgacttgttggagag 51871678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 38520634 - 38520783
Alignment:
Q  90 gaagaaaaaac-tagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaac 185  Q
    ||||||||||| |||||| |||||||||| |||||||| | | ||||||||||   | | |||| || | ||||||| || | |||||||||  ||||||    
T  38520634 gaagaaaaaacatagatctatgtgaaaatcacttatttagatcgaaatagagagaaaaagatgaagatgagtgatttcaggtaaaaaattgatccaaaac 38520733  T
Q  186 cacccccttaatgaagaaaataaaagagataatttagagacagaaaatta 235  Q
    ||||||||||||||||||| | ||||||| ||  |||||| | |||||||    
T  38520734 cacccccttaatgaagaaactgaaagagaaaacctagagaaaaaaaatta 38520783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 45805979 - 45806078
Alignment:
Q  155 ggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    |||||||| || |||||||||||| |||||||||||||  ||| ||||||    |||||| ||| |||||| ||||||||| | ||||||||||||||||    
T  45805979 ggtgatttcagatcaaaaattgacccaaaaccacccccccaataaagaaacgggaagagaaaatctagagagagaaaattaggaccgacttgttggagag 45806078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 7342644 - 7342535
Alignment:
Q  144 atatgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgac 243  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||  ||||||||||    |||||| ||  |||||| ||||||||| ||||| |    
T  7342644 atatgaagaggggtgatttcaggtcaaaaattgacccaaaaccaccccc-caatgaagaaacgggaagagaaaacctagagagagaaaattagggccggc 7342546  T
Q  244 ttgttggagag 254  Q
    || ||||||||    
T  7342545 ttattggagag 7342535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 9172472 - 9172362
Alignment:
Q  84 cacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagagaaca---tatgatgaggggtgatttaagttcaaaaattgactc 180  Q
    ||||||||| ||||| ||||||| |||||||| | |||||||| | | ||||||||||| |   ||||| |||||||||||| || |||| ||||||| |    
T  9172472 cacaaagaa-aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagaaaaaaatatgaagaggggtgatttcaggtcaagaattgaccc 9172374  T
Q  181 aaaaccaccccc 192  Q
    ||||||||||||    
T  9172373 aaaaccaccccc 9172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 9180454 - 9180344
Alignment:
Q  84 cacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagagaaca---tatgatgaggggtgatttaagttcaaaaattgactc 180  Q
    ||||||||| ||||| ||||||| |||||||| | |||||||| | | ||||||||||| |   ||||| |||||||||||| || |||| ||||||| |    
T  9180454 cacaaagaa-aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagaaaaaaatatgaagaggggtgatttcaggtcaagaattgaccc 9180356  T
Q  181 aaaaccaccccc 192  Q
    ||||||||||||    
T  9180355 aaaaccaccccc 9180344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 33291580 - 33291687
Alignment:
Q  146 atgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgactt 245  Q
    |||| |||||||||||| || |||| ||||||| |||||||| ||||| |||||| ||| || |||| | ||| |||||| |||||| || |||||||||    
T  33291580 atgaagaggggtgatttcaggtcaagaattgacccaaaacca-cccctcaatgaaaaaactataagaaaaaatctagagaaagaaaactagggccgactt 33291678  T
Q  246 gttggagag 254  Q
    |||| ||||    
T  33291679 gttgaagag 33291687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 44637318 - 44637235
Alignment:
Q  170 aaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagaga-cagaaaattatggccgacttgttggag 252  Q
    ||||||||| ||||||||||||||||||||||||| || |||||| ||| || |||  | ||||||| |||||| |||||||||    
T  44637318 aaaattgacccaaaaccacccccttaatgaagaaactagaagagaaaatctaaagagaaaaaaattagggccgatttgttggag 44637235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 40646678 - 40646495
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| | |||||||| |||||||| | | |||||| | |   | | |||| || | ||||||| || |||| ||||    
T  40646678 gaaattacaaagaaaaaaaacctagatctacgtgaaaatcacttatttagattgaaataaatagaaaaagatgaagatgagtgattttaggtcaagaatt 40646579  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagagga 260  Q
    ||| |||||||||||| | |||||||||| |  |||||| ||  |||||| |||||| || ||||| |||||||||||| |||||    
T  40646578 gacccaaaaccacccc-tcaatgaagaaattgtaagagaaaacctagagagagaaaactagggccggcttgttggagagggagga 40646495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 51868737 - 51868852
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||| | |||||||| | | ||||||||||   | | |||| |||||||||||| || |||| ||||    
T  51868737 gaaatcacaaagaa-aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggggtgatttcaggtcaagaatt 51868835  T
Q  176 gactcaaaaccaccccc 192  Q
     || |||||||||||||    
T  51868836 aacccaaaaccaccccc 51868852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 25406374 - 25406539
Alignment:
Q  77 acgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaa 173  Q
    |||||||||||||||| ||||| ||||||| |||||||| | |||||||| | | |||||||||   || | |||| |||| ||||||| || |||| ||    
T  25406374 acgaaatcacaaagaa-aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagaggtgtgatttcaggtcaagaa 25406472  T
Q  174 ttgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccg 241  Q
    ||||| ||||| |||||||  ||||||||||    |||| | || ||||||| ||||||||| |||||    
T  25406473 ttgacccaaaatcaccccc-caatgaagaaacgggaagaaaaaacttagagaaagaaaattaaggccg 25406539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 27469700 - 27469762
Alignment:
Q  63 gtcgcactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttatttt 127  Q
    |||||||| |||| |||||||||||||  ||||||||| | || |||||||||||||||||||||    
T  27469700 gtcgcactaagacgacgaaatcacaaa--agaaaaaacgaaatagatgtgaaaataacttatttt 27469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 23791179 - 23791120
Alignment:
Q  67 cactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattt 126  Q
    |||| ||| ||||||||||||||| | ||||||||| || ||||||||||| ||||||||    
T  23791179 cactaagaaaacgaaatcacaaaggaaaaaaaactaaatagatgtgaaaatcacttattt 23791120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 5324679 - 5324826
Alignment:
Q  110 gtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaat 206  Q
    |||||||| |||||||| | | ||||||||||   | | |||| ||| |||||||  || |||| ||||||| ||||| || ||| | |||||||||| |    
T  5324679 gtgaaaatcacttatttagattgaaatagagagaaaaagatgaagagaggtgattccaggtcaagaattgacccaaaatcatccc-tcaatgaagaaact 5324777  T
Q  207 aaaagagataatttagagacagaaaattatggccgacttgttggagaga 255  Q
      |||||| ||| |||||| ||||||||| ||| |||||||||||||||    
T  5324778 tgaagagaaaatctagagagagaaaattagggctgacttgttggagaga 5324826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 27872719 - 27872615
Alignment:
Q  90 gaagaaaaaact-agatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaattgactcaaaac 185  Q
    |||||||||||| ||||| |||||||||| |||||||| | | |||||||||   || | |||| || ||||||||| |  |||||||||||| ||||||    
T  27872719 gaagaaaaaacttagatctatgtgaaaatcacttatttagattgaaatagagcgaaaaagatgaagatgggtgatttcatgtcaaaaattgacccaaaac 27872620  T
Q  186 caccc 190  Q
    |||||    
T  27872619 caccc 27872615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 33177576 - 33177650
Alignment:
Q  50 cgaacaacataatgtcgcactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattt 126  Q
    ||||||||| || |||||||| |||||| |||||||| ||  ||||||||| | || ||||||||||| ||||||||    
T  33177576 cgaacaacacaacgtcgcactaagacaatgaaatcacgaa--agaaaaaacgaaatggatgtgaaaatcacttattt 33177650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 44543295 - 44543231
Alignment:
Q  25 aatcaaataacaacgcataaaacaacgaacaacataatgtcgcactgagacaacgaaatcacaaa 89  Q
    ||||||| |||  ||||||| || |||||||||| || |||||||| |||| |||||||||||||    
T  44543295 aatcaaacaacgccgcataatacgacgaacaacacaaagtcgcacttagacgacgaaatcacaaa 44543231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 50166281 - 50166366
Alignment:
Q  167 tcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    |||| ||||||| |||||||||||||  ||||||||||    |||||| ||  |||||| |||||||||||| || ||||||||||||    
T  50166281 tcaataattgacccaaaaccaccccc--aatgaagaaacgggaagagaaaacctagagagagaaaattatgggcggcttgttggagag 50166366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 22927962 - 22928141
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagagaacatatgatga---ggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| |||||||||||||  ||||||| | |||||||| | | ||||||||||  | | |||||   |||||||||| || |||| ||||    
T  22927962 gaaatcacaaagaa-aaaaaactagatctgtgtgaaagtcacttatttagattgaaatagagagaaaaagatgaaaaggggtgatttcaggtcaagaatt 22928060  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagaga 257  Q
    ||| ||||||||||||| |||||||||||    |||||| ||  |||||| ||||||||| ||||| |||||||||||||||    
T  22928061 gacccaaaaccaccccc-taatgaagaaacgggaagagaaaacctagagagagaaaattagggccggcttgttggagagaga 22928141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 46822000 - 46821817
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| |||||||||| |||||||| | | |||||| |||   | | |||| |||||||||||| || |||| ||||    
T  46822000 gaaattacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgatttcaggtcaagaatt 46821901  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagagga 260  Q
    ||| |||||||| ||||| |||||| ||| || |||||| ||  |||||| |||||| || ||||| |||||||||||| |||||    
T  46821900 gacccaaaacca-cccctcaatgaaaaaattataagagaaaacctagagagagaaaactagggccggcttgttggagagggagga 46821817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 20116567 - 20116393
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||||||||||||  |||| ||||||| |||||||||| |||||||| | | |||||||| |   | | |||| || ||||||||| || |||||||||    
T  20116567 gaaatcacaaagaa--aaaacctagatctatgtgaaaatcacttatttagattgaaatagatagaaaaagatgaagaagggtgatttcaggtcaaaaatt 20116470  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggaga 253  Q
    ||| |||||| ||||| | | |||||||| |  |||||| ||  |||||| |||||| || |||||||||||||||||    
T  20116469 gacccaaaactacccc-tcattgaagaaacttgaagagaaaacatagagagagaaaactagggccgacttgttggaga 20116393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 26492350 - 26492174
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||   | |||||||||   || | |||| ||||||| |||| || |||| ||||    
T  26492350 gaaatcacaaagaa-aaaaaactagatctatgtgaaaatcacttatttaaattgaaatagagagaaaaagatgaagaggggttatttcaggtcaagaatt 26492252  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||| ||||| |||||||||| |  |||| | ||| |||||| | |||| || ||||| ||| ||||||||    
T  26492251 gacccaaaacca-cccctcaatgaagaaactgtaagacaaaatctagagagataaaactagggccggcttattggagag 26492174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 42311265 - 42311089
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagagaacatatgatga---ggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| ||||||| || |||||||| | | ||||||||||  | |||||||   ||| |||||| || |||| ||||    
T  42311265 gaaatcacaaagaa-aaaaacctagatctatgtgaatatcacttatttagattgaaatagagagaaaatgatgaagagggatgatttcaggtcaagaatt 42311167  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||| ||||| | |||||||| |  |||||| ||  |||||| ||||||||| || || ||||||||||||    
T  42311166 gacccaaaacca-cccctcagtgaagaaactctaagagaaaacctagagagagaaaattagggtcggcttgttggagag 42311089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 5348667 - 5348723
Alignment:
Q  33 aacaacgcataaaacaacgaacaacataatgtcgcactgagacaacgaaatcacaaa 89  Q
    |||| |||| |||||||||||||||| ||||| ||||| |||| |||||||||||||    
T  5348667 aacaccgcacaaaacaacgaacaacacaatgttgcactcagacgacgaaatcacaaa 5348723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 26583699 - 26583523
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||  || ||||||| |||||||| | | ||||||||||   | | |||| |||||||||||| || |||| ||||    
T  26583699 gaaatcacaaagaa-aaaaacctagatatatatgaaaatcacttatttagattgaaatagagataaaaagatgaagaggggtgatttcaggtcaagaatt 26583601  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    |||  ||||||| ||||| |||||||||| |  |||| | ||  |||| | |||||| || ||||| ||||||||||||    
T  26583600 gaccaaaaacca-cccctcaatgaagaaactgtaagaaaaaacctagaaagagaaaactagggccggcttgttggagag 26583523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 253
Target Start/End: Original strand, 35667337 - 35667497
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    ||||| ||||||| |||||||||| |||||||| | | ||||||||||   | |||||| || ||||||||| |  |||| ||||||  |||||||||||    
T  35667337 aaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaatatgaagaagggtgattttaagtcaagaattgatccaaaaccaccc 35667436  T
Q  191 ccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggaga 253  Q
    | | |||||| ||| || |||||| || ||| | | |||||| || |||||||||||||||||    
T  35667437 c-tcaatgaaaaaattagaagagaaaacttaaaaa-agaaaactagggccgacttgttggaga 35667497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 6558862 - 6558817
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttat 124  Q
    |||||||||||||||||||| ||| ||| |||||||||| ||||||    
T  6558862 gaaatcacaaagaagaaaaacctaaatctatgtgaaaatcacttat 6558817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 31235898 - 31236032
Alignment:
Q  95 aaaaactagatcgatgtgaaaa-taacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    |||| ||||||| ||||||||| | |||||||| | | ||||||||||   | | |||| |||||| ||||| |  |||||||||||| ||||| ||| |    
T  31235898 aaaacctagatctatgtgaaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggagatttcatgtcaaaaattgacccaaaatcactc 31235997  T
Q  191 ccttaatgaagaaaataaaagagataatttagaga 225  Q
    ||| ||||||||||||  |||||| ||| ||||||    
T  31235998 cctcaatgaagaaaatggaagagaaaatctagaga 31236032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 12652911 - 12652745
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    ||||| ||||||| |||||||||| |||||||| | | ||||||||||   | | |||| |||||||||||| || |||| ||||||| |||||||||||    
T  12652911 aaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccaccc 12652812  T
Q  191 ccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagag 258  Q
    | | |||||||||| |   ||||| ||  |||||| |||||| || ||||||||||||||||||||||    
T  12652811 c-tcaatgaagaaactgtgagagaaaacctagagagagaaaactagggccgacttgttggagagagag 12652745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 25064221 - 25064044
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| |||||||||| |||||||| | | |||||| |||   | | |||| ||| |||||||| || |||| ||||    
T  25064221 gaaattacaaagaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagagaggtgatttcaggtcaagaatt 25064122  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||||||| | |||||||||| |  |||||| ||  |||||| |||||| || ||||| ||||||||||||    
T  25064121 gacccaaaaccacccc-tcaatgaagaaattgtaagagaaaacctagagagagaaaactagggccggcttgttggagag 25064044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 254
Target Start/End: Complemental strand, 8496946 - 8496774
Alignment:
Q  85 acaaagaagaaaaaac-tagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactc 180  Q
    |||||||| ||||||| |||||| |||||||||| |||||||| | | |||||| |||   | | |||| |||||||||||| || |||| |||||||||    
T  8496946 acaaagaaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgatttcaggtcaagaattgactc 8496847  T
Q  181 aaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||||||| ||||| |||||||||| |  |||||| ||  |||||| |||||| || | ||||||| ||||||||    
T  8496846 aaaacca-cccctcaatgaagaaattgtaagagaaaacctagagagagaaaactaggaccgacttattggagag 8496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 17237377 - 17237490
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||| | | |||||| ||   || | |||| |||||||||||| |  |||| ||||    
T  17237377 gaaatcacaaagaa--aaaacctagatctatgtgaaaataacttatttagattgaaatatagagaaaaagatgaagaggggtgatttcatgtcaagaatt 17237474  T
Q  176 gactcaaaaccacccc 191  Q
    ||| ||||||||||||    
T  17237475 gacccaaaaccacccc 17237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 33740670 - 33740796
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||| ||| |||||||||| |||||||| | | ||||||||||   | | |||| |||||||||||| || |||| ||||    
T  33740670 gaaatcacaaagaa-aaaaacctaaatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgattttaggtcaagaatt 33740768  T
Q  176 gactcaaaaccacccccttaatgaagaaa 204  Q
    |||  ||||||| ||||| ||||||||||    
T  33740769 gaccaaaaacca-cccctcaatgaagaaa 33740796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 36233997 - 36233812
Alignment:
Q  79 gaaatcacaaagaagaaaaaa--ctagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaa 173  Q
    ||||| |||||||| ||||||  ||||||| |||||||||| |||||||| | | |||||| |||   | | |||| |||||||||||| || |||  ||    
T  36233997 gaaattacaaagaaaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgatttcaggtcatgaa 36233898  T
Q  174 ttgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagagga 260  Q
    ||||| |||||||||||| | |||||||||| |  |||||| ||| |||||| |||||| || |||||||||||||||||| |||||    
T  36233897 ttgacccaaaaccacccc-tcaatgaagaaattgcaagagaaaatctagagagagaaaactagggccgacttgttggagagggagga 36233812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 2808573 - 2808738
Alignment:
Q  91 aagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaacca 187  Q
    |||||||| ||||||| |||||||||| |||||||| |   ||||||||||   | | |||| |||||||||||| || |||| ||||||| ||||||||    
T  2808573 aagaaaaacctagatctatgtgaaaatcacttatttagactgaaatagagagaaatagatgaagaggggtgatttcaggtcaagaattgacccaaaacca 2808672  T
Q  188 cccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
     ||||| |||||||||||| ||||| | ||  |||| | ||||||||| |||||||||| |||||||    
T  2808673 -cccctcaatgaagaaaatgaaagaaaaaacctagaaaaagaaaattagggccgacttgatggagag 2808738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 40660024 - 40660134
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag-aacatatgatgaggggtgatttaagttcaaaaattga 177  Q
    ||||||||||||||  |||| ||||||| |||||||||| |||||||| | | ||||||||| || | |||| || | ||||||| || |||| ||||||    
T  40660024 gaaatcacaaagaa--aaaatctagatctatgtgaaaatcacttatttagattgaaatagagaaaaagatgaagatgtgtgatttcaggtcaagaattga 40660121  T
Q  178 ctcaaaaccaccc 190  Q
    |||||||||||||    
T  40660122 ctcaaaaccaccc 40660134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 6173621 - 6173495
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||| | | ||||||||||   | | |||| |||||||||||| || |||| |||     
T  6173621 gaaatcacaaagaa-aaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgatttcaggtcaagaata 6173523  T
Q  176 gactcaaaaccacccccttaatgaagaaa 204  Q
    |||  ||||||| ||||| ||||||||||    
T  6173522 gaccgaaaacca-cccctcaatgaagaaa 6173495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 459435 - 459492
Alignment:
Q  146 atgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaa 204  Q
    |||| |||||||||||| || |||||||||||| |||||||| ||||| ||||||||||    
T  459435 atgaagaggggtgatttcaggtcaaaaattgacccaaaacca-cccctcaatgaagaaa 459492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 25623023 - 25623098
Alignment:
Q  49 acgaacaacataatgtcgcactgagacaacgaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattt 126  Q
    |||||||| | ||||||||||| |||| |||||||||| |  |||||||||| | || ||||||||||| ||||||||    
T  25623023 acgaacaaaacaatgtcgcactaagacgacgaaatcacga--aagaaaaaacaaaatagatgtgaaaatcacttattt 25623098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 32680673 - 32680735
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga 141  Q
    |||||||||||||| ||||| ||||||| |||||||| | |||||||| | | ||||||||||    
T  32680673 gaaatcacaaagaaaaaaaacctagatctatgtgaaagtcacttatttagattgaaatagaga 32680735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 10359715 - 10359815
Alignment:
Q  154 gggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggaga 253  Q
    ||||||||| || |||||||||||| |||||||||||||| |||||||||| | ||||||| ||| |||||| | ||||||| ||||  |||||||||||    
T  10359715 gggtgatttcaggtcaaaaattgacccaaaaccaccccctcaatgaagaaactgaaagagaaaatctagagagaaaaaattaaggccatcttgttggaga 10359814  T
Q  254 g 254  Q
    |    
T  10359815 g 10359815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 34024542 - 34024704
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    ||||| ||||||| ||||||||||||||||||| | | |||||||||   || | |||| |||||||||||| || |||| ||||||  |||||||| ||    
T  34024542 aaaaacctagatctatgtgaaaataacttatttagattgaaatagagagaaaaagatgaagaggggtgatttcaggtcaagaattgatccaaaacca-cc 34024640  T
Q  191 ccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||||| ||||||| | ||| |||||| | |||  || | ||||||||||| ||||    
T  34024641 cctcaatgaagaaactaaaagaaaaaatctagagagaaaaacctaagaccgacttgttgaagag 34024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 1531905 - 1531727
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaat----agagaacatatgatgaggggtgatttaagttcaaaaat 174  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||| | | |||||    |||||| | || | |||||||||||| || |||| |||    
T  1531905 gaaatcacaaagaaaaaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagagaaaagataaagaggggtgatttcaggtcaagaat 1531806  T
Q  175 tgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    |||| ||| |||| ||||| |||||||||| |  |||||| ||  |||| | |||||| || | ||| ||||||||||||    
T  1531805 tgacccaatacca-cccctcaatgaagaaactgtaagagaaaacctagaaagagaaaactaggaccggcttgttggagag 1531727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 9283839 - 9283732
Alignment:
Q  146 atgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgactt 245  Q
    |||| |||||||||||| || | ||  |||||| |||||||||||| | |||||||||| |  |||||||||  |||||| |||||| || |||||||||    
T  9283839 atgaagaggggtgatttcaggttaagtattgacccaaaaccacccc-tcaatgaagaaattgtaagagataacctagagagagaaaactagggccgactt 9283741  T
Q  246 gttggagag 254  Q
    |||||||||    
T  9283740 gttggagag 9283732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 12265383 - 12265323
Alignment:
Q  146 atgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaat 206  Q
    |||| |||||||||||| || ||||||||||||  |||| |||||||||||||||||||||    
T  12265383 atgaagaggggtgatttcaggtcaaaaattgaccaaaaatcacccccttaatgaagaaaat 12265323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 25273880 - 25273696
Alignment:
Q  79 gaaatcacaaagaagaaaaaa--ctagatcgatgtgaaaataacttattttgttagaaatagaga----acat----atgatgaggggtgatttaagttc 168  Q
    |||||||||||||| ||||||  ||||||| |||||||||| |||||||| | | ||||||||||    | ||    |||| |||||||||||| || ||    
T  25273880 gaaatcacaaagaaaaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaagatgaagatgaagaggggtgatttcaggtc 25273781  T
Q  169 aaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    || ||||||  |||||||||||| | |||| ||||| |  |||||| ||| |||||| |||||| || ||||| ||||||||||||    
T  25273780 aagaattgatccaaaaccacccc-tcaatggagaaactgtaagagaaaatctagagagagaaaactagggccggcttgttggagag 25273696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 10389859 - 10390027
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    ||||| ||||||| |||||||| | |||||||| | | ||||||||||   | | |||| || | ||||||| || |||| ||||||| |||||||||||    
T  10389859 aaaaacctagatctatgtgaaagtcacttatttagattgaaatagagagaaaaagatgaagatgagtgatttcaggtcaagaattgacccaaaaccaccc 10389958  T
Q  191 ccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagagga 260  Q
    | | |||||||||| || |||||| ||  |||| | |||||| || ||||| |||||||||||| |||||    
T  10389959 c-tcaatgaagaaactataagagaaaacctagaaagagaaaactagggccggcttgttggagagggagga 10390027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 38706802 - 38706928
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||| ||| |||||||||| |||||||| | | ||||||||||   | | |||| || ||||||||| || |||| ||||    
T  38706802 gaaatcacaaagaa-aaaaacctaaatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagaagggtgattttagatcaagaatt 38706900  T
Q  176 gactcaaaaccacccccttaatgaagaaa 204  Q
    ||| |||||||| ||||| ||||||||||    
T  38706901 gacccaaaacca-cccctcaatgaagaaa 38706928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 21090071 - 21089995
Alignment:
Q  156 gtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaa 232  Q
    ||||||| || ||||| |||||| |||||||||||||| |||||||||| || |||||| ||  |||||| ||||||    
T  21090071 gtgatttcagatcaaagattgacccaaaaccaccccctcaatgaagaaactagaagagaaaacctagagagagaaaa 21089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 8009462 - 8009512
Alignment:
Q  91 aagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga 141  Q
    |||||||||||||||| |||||||||| |||||||| | | ||||||||||    
T  8009462 aagaaaaaactagatctatgtgaaaatcacttatttagattgaaatagaga 8009512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 43154127 - 43154224
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga--acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccacc 189  Q
    ||||| ||||||| |||||||||| |||||||| | | ||||||||||  | | |||| |||||||||||| |  |||| ||||||| ||||||||||    
T  43154127 aaaaacctagatctatgtgaaaatcacttatttagattgaaatagagagaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 43154224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 44947322 - 44947230
Alignment:
Q  155 ggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgtt 248  Q
    |||||||| || |||| ||||||| |||||||| ||||| |||||||||| |  |||||| || ||||||| |||||| || | ||||||||||    
T  44947322 ggtgatttcaggtcaagaattgacccaaaacca-cccctcaatgaagaaactgtaagagaaaacttagagagagaaaactaggaccgacttgtt 44947230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 49072940 - 49073008
Alignment:
Q  167 tcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaatta 235  Q
    |||||||||||| |||||||||  |||  |||||||||||| || | |||| ||||||| |||||||||    
T  49072940 tcaaaaattgacgcaaaaccacatcctctatgaagaaaatagaaaatataacttagagagagaaaatta 49073008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 44100034 - 44100204
Alignment:
Q  91 aagaaaaaact-agatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaacc 186  Q
    ||||||||||| ||||| ||||||||||||||||||| | | |||||| |||   | | |||| |||||||||||| || |||| ||| ||| |||||||    
T  44100034 aagaaaaaacttagatctatgtgaaaataacttatttagattgaaatatagagaaaaagatgaagaggggtgattttaggtcaagaatcgacccaaaacc 44100133  T
Q  187 acccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagag 258  Q
    ||||| | ||||||||||   ||||||| ||  |||||| |||||| || ||||| ||||||||||||||||    
T  44100134 acccc-tcaatgaagaaaccgaaagagaaaacctagagagagaaaactagggccggcttgttggagagagag 44100204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 9619449 - 9619626
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||| ||| ||||| ||| ||| |||||||||| |||||||| | | |||||| |||   | | |||| |||||||||||| || |||| ||||    
T  9619449 gaaattacaatgaaaaaaaatctaaatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagaggggtgatttcaggtcaagaatt 9619548  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||||||| ||||| |||||||||| |  |||||| ||| |||||| |||||| ||  |||| ||||||||||||    
T  9619549 gacccaaaacca-cccctcaatgaagaaattgtaagagaaaatctagagagagaaaactagagccggcttgttggagag 9619626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 11196868 - 11196702
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagag-aacatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccccc 192  Q
    ||||| ||||||| |||||||||| |||||||| | | ||||||||| || | |||| || || |||||| || |||| ||||||| |||||||| ||||    
T  11196868 aaaaacctagatctatgtgaaaatcacttatttagattgaaatagagaaaaagatgaagatggatgatttcaggtcaagaattgacccaaaacca-cccc 11196770  T
Q  193 ttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagagagagga 260  Q
    | || ||||||| || |||||| ||  |||||| |||||| || ||||  |||||||||||| |||||    
T  11196769 tcaacgaagaaactagaagagaaaaactagagagagaaaactagggccagcttgttggagagggagga 11196702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 9072710 - 9072552
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    |||||||||||||| ||||| ||||||  |||||||| | ||||||||   | ||||||||||   | | |||| |||||||||||| |  |||||||||    
T  9072710 gaaatcacaaagaaaaaaaatctagatttatgtgaaagtcacttatttaaattgaaatagagagaaaaagatgaagaggggtgatttcaagtcaaaaatt 9072611  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaatta 235  Q
    ||| |||||||||||||  ||||||||||  | | |||| ||| |||||| |||||||||    
T  9072610 gacccaaaaccaccccc-caatgaagaaacgagatgagaaaatctagagagagaaaatta 9072552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 11725600 - 11725511
Alignment:
Q  151 gaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccg 241  Q
    |||||||||||| || |||| ||||||| |||||||| ||||| |||||||||| | ||||||| ||| |||||| |||||| || |||||    
T  11725600 gaggggtgatttcaggtcaagaattgacccaaaacca-cccctcaatgaagaaactgaaagagaaaatctagagagagaaaactagggccg 11725511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 28239811 - 28239696
Alignment:
Q  95 aaaaactagatcgatgtgaaaata-acttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaattgactcaaaaccaccc 190  Q
    |||| ||||||| ||||||||| | |||||||| | | ||||||||||   | | |||| ||| |||||||| || |||||||||||| ||||| |||||    
T  28239811 aaaacctagatctatgtgaaaaaacacttatttagattgaaatagagagaaaaagatgaagagaggtgatttcaggtcaaaaattgacccaaaatcaccc 28239712  T
Q  191 ccttaatgaagaaaat 206  Q
    ||| ||||||||||||    
T  28239711 cctcaatgaagaaaat 28239696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 43890216 - 43890390
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| |||| ||||| |||||||| | | ||| || |||   | | |||| |||||||||||| || ||||||| |    
T  43890216 gaaattacaaagaaaaaaaatctagatctatgtcaaaatcacttatttagattgaattaaagagaaaaagatgaagaggggtgatttcaggtcaaaaaat 43890315  T
Q  176 gactcaaaaccacccccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttgga 251  Q
    ||  |||||||| ||||| |||||||||| |  |||||| ||  |||||| |||||| || ||||||||| |||||    
T  43890316 gatccaaaacca-cccctcaatgaagaaattgtaagagaaaacctagagagagaaaactagggccgacttattgga 43890390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 32724595 - 32724758
Alignment:
Q  94 aaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga--acatatgatgaggggtgatttaagttcaaaaatt-gactcaaaaccaccc 190  Q
    ||||| ||||||| |||||||||| |||||||| | | ||||||||||  | | |||| |||  ||||||| || |||| |||| ||| |||||||||||    
T  32724595 aaaaatctagatctatgtgaaaatcacttatttagattgaaatagagagaaaagatgaagagaagtgatttcaggtcaataatttgacccaaaaccaccc 32724694  T
Q  191 ccttaatgaagaaaataaaagagataatttagagacagaaaattatggccgacttgttggagag 254  Q
    ||| |||| ||||| |  |||||| ||   ||||| |||||| || || |||||||||||||||    
T  32724695 cctcaatggagaaactgtaagagaaaacccagagagagaaaactagggtcgacttgttggagag 32724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 44578028 - 44577902
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagaga---acatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||| |||||||| ||||| ||||||| ||||| |||| ||||| || | | ||||||||||   | | |||| |||| ||||||| || |||||||||    
T  44578028 gaaattacaaagaa-aaaaacctagatctatgtgtaaatcacttagttagattgaaatagagagaaaaagatgaagaggagtgattttaggtcaaaaatt 44577930  T
Q  176 gactcaaaaccacccccttaatgaagaaa 204  Q
    ||| |||||||| ||||| ||||||||||    
T  44577929 gacccaaaacca-cccctcaatgaagaaa 44577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 15597328 - 15597373
Alignment:
Q  146 atgatgaggggtgatttaagttcaaaaattgactcaaaaccacccc 191  Q
    |||| |||||||||||| || ||||||||||||| |||||||||||    
T  15597328 atgaagaggggtgatttcaggtcaaaaattgactgaaaaccacccc 15597373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 42448119 - 42448234
Alignment:
Q  79 gaaatcacaaagaagaaaaaactagatcgatgtgaaaataacttattttgttagaaatagag---aacatatgatgaggggtgatttaagttcaaaaatt 175  Q
    ||||||||||||||  |||| ||||||| || || |||| |||||||| | | |||||||||   || | |||| |||||||||||| || |||| ||||    
T  42448119 gaaatcacaaagaaacaaaacctagatctatatgtaaatcacttatttagattgaaatagagagaaaaagatgaagaggggtgatttcaggtcaagaatt 42448218  T
Q  176 gactcaaaaccacccc 191  Q
     || ||||||||||||    
T  42448219 aacccaaaaccacccc 42448234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 1236764 - 1236828
Alignment:
Q  25 aatcaaataacaacgcataaaacaacgaacaacataatgtcgcactgagacaacgaaatcacaaa 89  Q
    ||||||| |||  |||| || ||||||||||||| || |||||||| |||| |||||||||||||    
T  1236764 aatcaaacaacgccgcacaagacaacgaacaacacaaggtcgcacttagacgacgaaatcacaaa 1236828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 361916 - 362057
Alignment:
Q  108 atgtgaaaataacttattttgttagaaatagagaacat-atgatgaggggtgatttaagttcaaaaattgactcaaaaccacccccttaatgaagaaaat 206  Q
    |||||||||| |||||||| | | ||||||||||| |  |||  |||||||||||| || |||| |||||||||||||||| ||||| |||||||||| |    
T  361916 atgtgaaaattacttatttagattgaaatagagaaaaagatggagaggggtgatttcaggtcaagaattgactcaaaacca-cccctcaatgaagaaact 362014  T
Q  207 aaaagagataatttagagacagaaaattatggccgacttgttg 249  Q
      |||||| ||  || ||| |||||| || ||||| |||||||    
T  362015 gtaagagaaaacctaaagagagaaaactaaggccggcttgttg 362057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University