View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11524_high_1 (Length: 851)
Name: NF11524_high_1
Description: NF11524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11524_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 482 - 733
Target Start/End: Complemental strand, 51984658 - 51984402
Alignment:
| Q |
482 |
tgccgaggaatatatctatgagacacactattcgtttattattctcaattacttcttttggtcttatttataagagacgtatttttgctccgtttttaat |
581 |
Q |
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| T |
51984658 |
tgccgtggaatatatctatgagacacaccattcgtttattattctcaattactttttctgatcttatttataagagacgtatttttgctccgttcttaat |
51984559 |
T |
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| Q |
582 |
acaaaaaacgtatacattttaagtgtattaattattgaaattccttagtcaaatgaatttatatttaccttctttcaaagacattaacgacactcgaact |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
51984558 |
acaaaaaacgtatacattttaagtgtattaattattgaaattccttaatcaaatgaatttatatttaccttctttcaaagacattaacgagactcaaatt |
51984459 |
T |
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| Q |
682 |
-----cacaacatctcatattcaaatcttatctttttaccactaaatcaaaaatcat |
733 |
Q |
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| T |
51984458 |
cacaacacaacatctcatattcaaatcttatctttttaccactaaatcaaaaatcat |
51984402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 198 - 415
Target Start/End: Complemental strand, 51984944 - 51984727
Alignment:
| Q |
198 |
gaaaagaaaaattaaagaaatacaagtatataagatcattggtcaaacacaacgtcccaccaaattgtttatggggaatcgatgggatgaacacaactgc |
297 |
Q |
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| T |
51984944 |
gaaaagaaaaattaaaggaatacaagtatataagatcattgatcaaacacaacatcccaccaaattgtttatggggaatcgatgggatgaacacagctgc |
51984845 |
T |
|
| Q |
298 |
gtctagagctgcgcaaatctttacattagggttagagaaagagagtgcttgttatatacgagtgagtggtcaaaactttctaacccacttaccttgaccg |
397 |
Q |
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| T |
51984844 |
gtctagagctgcgcaaatctttacactagggttagagaaagagagtgcttgttatatacgagtgagcggtcaaaactttctaacccacttaccttgaccg |
51984745 |
T |
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| Q |
398 |
agaaagtaatattgtatt |
415 |
Q |
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| T |
51984744 |
agaaagtaatattgtatt |
51984727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 51985171 - 51984972
Alignment:
| Q |
3 |
gtaatgaagtaagaaatcaacaataaattaataaaatggccaacttataaattgaaaaattcggattataaaaactcacatccaaccccgtgtaataatt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
51985171 |
gtaatgaagtaagaaatcaacaataaattaataaaatggccaacttataaattgaaaaattcggattataaaaactcagatccaaccccctttaataatt |
51985072 |
T |
|
| Q |
103 |
tgtgttctttctagccttaatagggaatcacagaaggtaacatcgctcgcaattgataatcaattggcatccatgtcatgcaacctagaaacagggaaaa |
202 |
Q |
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| T |
51985071 |
tgtgttctttctagccttaatagggaatcagagaaggtaacatcgctcgcaattgataatcaattggcatccatgtcatgcaacctagaaacagggaaaa |
51984972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 51985366 - 51985332
Alignment:
| Q |
4 |
taatgaagtaagaaatcaacaataaattaataaaa |
38 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
51985366 |
taataaagtaagaaatcaacaataaattaataaaa |
51985332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 51985259 - 51985222
Alignment:
| Q |
13 |
aagaaatcaacaataaattaataaaatggccaacttat |
50 |
Q |
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||||||| |||||||||||||||||||| ||||||||| |
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| T |
51985259 |
aagaaatgaacaataaattaataaaatgcccaacttat |
51985222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 597 - 627
Target Start/End: Original strand, 13897145 - 13897175
Alignment:
| Q |
597 |
attttaagtgtattaattattgaaattcctt |
627 |
Q |
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| T |
13897145 |
attttaagtgtattaattattgaaattcctt |
13897175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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