View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11524_high_2 (Length: 514)

Name: NF11524_high_2
Description: NF11524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11524_high_2
NF11524_high_2
[»] chr4 (6 HSPs)
chr4 (1-235)||(45499720-45499951)
chr4 (250-408)||(12129625-12129785)
chr4 (251-402)||(1290143-1290296)
chr4 (328-408)||(8155819-8155899)
chr4 (328-376)||(1834202-1834250)
chr4 (328-408)||(1835041-1835121)
[»] chr1 (24 HSPs)
chr1 (251-408)||(36612856-36613014)
chr1 (333-408)||(39221401-39221476)
chr1 (301-402)||(43059951-43060053)
chr1 (302-408)||(36613843-36613950)
chr1 (334-408)||(50681547-50681621)
chr1 (301-408)||(25652768-25652876)
chr1 (328-408)||(37526817-37526897)
chr1 (328-408)||(50680413-50680493)
chr1 (249-408)||(39153056-39153216)
chr1 (251-407)||(11437139-11437297)
chr1 (249-376)||(40384725-40384855)
chr1 (305-398)||(51685714-51685808)
chr1 (302-386)||(43058840-43058925)
chr1 (251-402)||(11436045-11436198)
chr1 (348-397)||(39222423-39222472)
chr1 (300-376)||(43377773-43377850)
chr1 (328-408)||(35594297-35594377)
chr1 (328-376)||(35595163-35595211)
chr1 (302-408)||(43378652-43378759)
chr1 (362-408)||(23980414-23980460)
chr1 (367-396)||(7674596-7674625)
chr1 (341-402)||(39152026-39152086)
chr1 (328-376)||(51684448-51684496)
chr1 (352-408)||(52275074-52275130)
[»] chr8 (15 HSPs)
chr8 (328-408)||(10006426-10006506)
chr8 (328-408)||(10007702-10007782)
chr8 (251-408)||(1823555-1823715)
chr8 (251-408)||(1858000-1858160)
chr8 (302-402)||(1824023-1824124)
chr8 (302-402)||(1858468-1858569)
chr8 (302-391)||(5514036-5514126)
chr8 (334-396)||(11456697-11456759)
chr8 (280-376)||(24123869-24123967)
chr8 (348-407)||(23169931-23169990)
chr8 (302-376)||(30335694-30335769)
chr8 (251-407)||(5514219-5514367)
chr8 (249-376)||(8389660-8389789)
chr8 (249-322)||(24361219-24361292)
chr8 (320-376)||(30568960-30569016)
[»] chr7 (12 HSPs)
chr7 (328-408)||(7500536-7500616)
chr7 (302-396)||(22629541-22629636)
chr7 (341-408)||(7501791-7501858)
chr7 (301-407)||(18371478-18371585)
chr7 (302-396)||(18372408-18372503)
chr7 (334-408)||(47369869-47369943)
chr7 (349-408)||(22630391-22630450)
chr7 (357-408)||(46482708-46482759)
chr7 (348-408)||(43900428-43900488)
chr7 (328-373)||(14998062-14998107)
chr7 (328-376)||(770732-770780)
chr7 (328-376)||(32253398-32253446)
[»] chr5 (14 HSPs)
chr5 (328-408)||(18486841-18486921)
chr5 (302-408)||(19752966-19753073)
chr5 (302-408)||(25524037-25524144)
chr5 (328-408)||(18485227-18485307)
chr5 (251-407)||(22940563-22940720)
chr5 (302-396)||(25523124-25523219)
chr5 (249-408)||(24332914-24333074)
chr5 (348-408)||(2686340-2686400)
chr5 (334-408)||(19754069-19754143)
chr5 (251-376)||(2186774-2186900)
chr5 (328-376)||(42195214-42195262)
chr5 (302-376)||(16650047-16650122)
chr5 (302-376)||(36486459-36486534)
chr5 (328-376)||(42196171-42196219)
[»] chr6 (6 HSPs)
chr6 (328-408)||(7314961-7315041)
chr6 (334-408)||(7316233-7316307)
chr6 (343-391)||(17496895-17496943)
chr6 (249-376)||(1829574-1829703)
chr6 (251-322)||(1828742-1828814)
chr6 (251-294)||(14823630-14823674)
[»] chr3 (17 HSPs)
chr3 (328-408)||(47615516-47615596)
chr3 (302-408)||(12700228-12700335)
chr3 (328-408)||(34019084-34019164)
chr3 (328-408)||(47614267-47614347)
chr3 (352-402)||(8876012-8876062)
chr3 (334-408)||(11670472-11670546)
chr3 (249-408)||(23770346-23770507)
chr3 (341-389)||(11671299-11671347)
chr3 (302-408)||(12703439-12703546)
chr3 (328-387)||(52105627-52105686)
chr3 (251-407)||(7758405-7758563)
chr3 (301-398)||(6249663-6249760)
chr3 (362-398)||(17776800-17776836)
chr3 (362-398)||(19078101-19078137)
chr3 (341-402)||(19984944-19985004)
chr3 (368-408)||(8593085-8593125)
chr3 (305-376)||(46721191-46721263)
[»] scaffold0320 (1 HSPs)
scaffold0320 (302-402)||(19543-19644)
[»] chr2 (12 HSPs)
chr2 (302-408)||(18905927-18906033)
chr2 (302-402)||(13030344-13030445)
chr2 (328-408)||(22848273-22848353)
chr2 (302-408)||(18869101-18869209)
chr2 (331-398)||(21837124-21837191)
chr2 (303-408)||(28617978-28618083)
chr2 (251-384)||(18904370-18904505)
chr2 (251-397)||(26544152-26544299)
chr2 (302-375)||(18300697-18300770)
chr2 (305-376)||(11996765-11996837)
chr2 (328-408)||(18797329-18797409)
chr2 (301-408)||(26545460-26545568)
[»] scaffold1303 (1 HSPs)
scaffold1303 (328-376)||(1521-1569)
[»] scaffold0294 (1 HSPs)
scaffold0294 (301-376)||(4496-4572)
[»] scaffold0045 (1 HSPs)
scaffold0045 (328-376)||(48389-48436)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45499951 - 45499720
Alignment:
Q  1 aacgcgacgttgttgattgctgcttttgattctggtctcgtcgctttctgactccatcgtttcnnnnnnnctcgtggaagctgttgataacgaaataaca 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||   ||    
T  45499951 aacgcgacgttgttgattgctggttttgattctggtctcgtcgctttctgactccatcgtttctttttt-ctcgtggaagctgttgataacgaaa---ca 45499856  T
Q  101 aatcgaaaagtgattttgattacctattcgtttccctcccttacgctctgaatttaggggagtgagttagttcagtacacctttaacttaagtctccgtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45499855 aatcgaaaagtgattttgattacctattcgtttccctcccttacgctctgaatttaggggagtgagttagttcagtacacttttaacttaagtctccgtc 45499756  T
Q  201 acgtttgaac-tttgtttctaacttcaaaatttgct 235  Q
     ||||||||| |||||||||||||||||||||||||    
T  45499755 tcgtttgaacttttgtttctaacttcaaaatttgct 45499720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 12129625 - 12129785
Alignment:
Q  250 ttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaattt-gatctcctaaaatttagtcccttta 347  Q
    |||||||||||||||  || ||||  ||| ||||| ||||||||| |||    |||||||||||| |||||||| || | | ||| |||||| || |||     
T  12129625 ttaaagtgcacttttcccctcttaactttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttgaccccttaagatttagcccatttg 12129724  T
Q  348 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  12129725 catctttggtcattttgatcaattttgacttattcaacgcctacgtggcaggccacgtgtg 12129785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 402
Target Start/End: Complemental strand, 1290296 - 1290143
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaatttgatctcc-taaaatttagtccctttac 348  Q
    ||||||||||||||  |||||||  ||| ||||  ||||||||| |||  | |||||||||||| |||||||| | | || ||| |||||  |||||| |    
T  1290296 taaagtgcacttttccccccttaactttcaaaatcttgcaattttggccctctaagtacaaaaactacaattttagccccctaagatttaacccctttgc 1290197  T
Q  349 atctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 402  Q
    |||||||||||| |||||||||||||||  | |||||||||| |||||| ||||    
T  1290196 atctttggtccttttggtcaattttgaccgagtcaacgcctaagtggcatgcca 1290143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 8155819 - 8155899
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| | |||| ||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||| |||||    
T  8155819 cctaagatttagccgctttgcatctttagtcattttggtcaactttgacttattcaacgcctacgtagcaggccacgtgtg 8155899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 1834202 - 1834250
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  1834202 cctaagatttagcccatttgcatctttggtccttttggtcaattttgac 1834250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 1835121 - 1835041
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||||| || | ||||||||||||  ||||||| ||  ||||| |||| |||||    
T  1835121 cctaagatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtg 1835041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 251 - 408
Target Start/End: Original strand, 36612856 - 36613014
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttttaagtacaaaaattacaatttgatctcc-taaaatttagtccctttaca 349  Q
    ||||||||| ||||  |||||||  ||| ||||||||||||||| || | ||||||||||||| |||||||| | | || ||| ||||||||||||| ||    
T  36612856 taaagtgcatttttccccccttaactttcaaaaatttgcaattttggatcttaagtacaaaaactacaattttaaccccctaagatttagtccctttgca 36612955  T
Q  350 tctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||||||| | |||||||||||| ||||||||||||| |||||||||||||| |||||    
T  36612956 tctttggtcattttggtcaattttaacttattcaacgcttacgtggcaggccacgtgtg 36613014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 39221401 - 39221476
Alignment:
Q  333 aatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  39221401 aatttagcccctttgcatctttggtccttttggtcaattttgactaattcaacgcctacgtggcaggccacgtgtg 39221476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 402
Target Start/End: Complemental strand, 43060053 - 43059951
Alignment:
Q  301 ttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcagg 399  Q
    ||||||||||||| |||||||| || | | ||| ||||||  | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43060053 ttaagtacaaaaactacaattttgaccccttaagatttagctcatttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcagg 43059954  T
Q  400 cca 402  Q
    |||    
T  43059953 cca 43059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 36613950 - 36613843
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| |||||||| || | ||||| |||||| | |||| || |||| ||||| ||| |||||||||||||||||||||||||||||||||||    
T  36613950 taagtacaaaaactacaattttgaccccctaagatttagcctctttgcaactttagtccttttgatcaattttgacttattcaacgcctacgtggcaggc 36613851  T
Q  401 catgtgtg 408  Q
    || |||||    
T  36613850 cacgtgtg 36613843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 50681621 - 50681547
Alignment:
Q  334 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||| | |||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  50681621 atttagcctctttgcatctttggtcctattgatcaattttgatttattcaacgcctacatggcaggccatgtgtg 50681547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 301 - 408
Target Start/End: Original strand, 25652768 - 25652876
Alignment:
Q  301 ttaagtacaaaaattacaa-tttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcagg 399  Q
    |||||||||||||||| || ||||  |  |||| |||||| || ||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  25652768 ttaagtacaaaaattataaatttggcccgctaagatttagcccatttgcatctttggtcattttggccaattttgacttattcaacgcctacgtggcagg 25652867  T
Q  400 ccatgtgtg 408  Q
    |||| ||||    
T  25652868 ccatatgtg 25652876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 37526897 - 37526817
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| |||||| |||||    
T  37526897 cctaagatttagcccctttgcatctttggtctttttgatcaattttgacttattcaacgcctacgtggtaggccacgtgtg 37526817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 50680413 - 50680493
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||  |||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  50680413 cctaagatttaacccctttgcatctttgatccttttggtcaattttgacttattcaacgcctacgtagcaggccacgtgtg 50680493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 39153216 - 39153056
Alignment:
Q  249 gttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcggctt-ttaagtacaaaaattacaattt-gatctcctaaaatttagtcccttt 346  Q
    ||||||||||||||||| |||||||  ||| ||||| ||||||||| |||   ||| ||||||||| |||||||| || |  |||| |||||  ||||||    
T  39153216 gttaaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaaccccttt 39153117  T
Q  347 acatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
     ||||||||||||| |||||||||||||||  | |||| |||||||||||| |||| |||||    
T  39153116 gcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtg 39153056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 11437297 - 11437139
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcgg-cttttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttac 348  Q
    ||||||||||||||| |||||||  ||| ||||| ||||||||| || |  ||||||||||||| |||||||| |  | ||||| |||||  || |||||    
T  11437297 taaagtgcactttttcccccttaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggccccctaagatttaacccttttac 11437198  T
Q  349 atctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 407  Q
    ||||||| |||| |||||||||||||||  | ||||||| || |||||| |||| ||||    
T  11437197 atctttgatccttttggtcaattttgaccgagtcaacgcttaagtggcatgccacgtgt 11437139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 376
Target Start/End: Original strand, 40384725 - 40384855
Alignment:
Q  249 gttaaagtgcacttttttcccctt-atttttaaaaaatttgcaatttcgg-cttttaagtacaaaaattacaattt-gatctcctaaaatttagtccctt 345  Q
    |||||||||||||||||||| ||| | |||| ||||| |||||||||  | ||  || ||||||||| |||||||| |||| |||||||||||| | |||    
T  40384725 gttaaagtgcacttttttcctctttaattttcaaaaagttgcaattttagtctcctatgtacaaaaactacaattttgatcccctaaaatttagcctctt 40384824  T
Q  346 tacatctttggtcctattggtcaattttgac 376  Q
    | ||||||||||||| |||| ||||||||||    
T  40384825 tgcatctttggtccttttggccaattttgac 40384855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 51685808 - 51685714
Alignment:
Q  305 gtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcag 398  Q
    ||||||||| |||||||| || | ||||| |||||| |||||| ||||||||||||| |||| ||||||| ||  ||||||||||||||||||||    
T  51685808 gtacaaaaactacaattttgaccccctaagatttagcccctttgcatctttggtccttttggccaattttaaccaattcaacgcctacgtggcag 51685714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 43058840 - 43058925
Alignment:
Q  302 taagtacaaaaattacaatttgatctc-ctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacg 386  Q
    |||||||||||| |||||||| | | | |||| |||||| ||||||||||||||| |||| |||||||||||||||||||| ||||    
T  43058840 taagtacaaaaactacaattttagccctctaagatttagcccctttacatctttgatccttttggtcaattttgacttattgaacg 43058925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 402
Target Start/End: Original strand, 11436045 - 11436198
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggc-ttttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttac 348  Q
    ||||||||||||||  ||| |||  ||| ||||| ||||||||| ||| ||||||||| ||||| |||||||| |  | ||||| |||||  || ||| |    
T  11436045 taaagtgcacttttccccctttaactttcaaaaacttgcaattttggccttttaagtataaaaactacaattttggccccctaagatttaacccatttgc 11436144  T
Q  349 atctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 402  Q
    ||||||||| || |||||||||||||||  | |||||||||| |||||| ||||    
T  11436145 atctttggttcttttggtcaattttgaccgagtcaacgcctaagtggcatgcca 11436198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 39222472 - 39222423
Alignment:
Q  348 catctttggtcctattggtcaattttgacttattcaacgcctacgtggca 397  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  39222472 catctttggtctttttgggcaattttgacttattcaacgcctacgtggca 39222423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 43377773 - 43377850
Alignment:
Q  300 tttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    |||||||| |||||||| ||||| |  |||||||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  43377773 tttaagtataaaaattataattttggcctcctaaaatttagtctctttacacctttgatccttttggtcaattttgac 43377850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 35594297 - 35594377
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||||||||| |||||| ||||||||||||| || | ||||||||||||  ||||||| ||  ||||| |||| |||||    
T  35594297 cctaaaatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtg 35594377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 35595211 - 35595163
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||||||||    
T  35595211 cctaagatttagcccctttgcatctttggtccttttggtcaattttgac 35595163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 43378759 - 43378652
Alignment:
Q  302 taagtacaaaaattacaa-tttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||||||||| ||||| | ||||| ||||||  ||||| |||||||  |||| |||||| ||||||||  | ||||||| || |||||| ||    
T  43378759 taagtacaaaaattacaattttgaccacctaagatttagcacctttgcatctttaatccttttggtcgattttgaccaagtcaacgcatatgtggcatgc 43378660  T
Q  401 catgtgtg 408  Q
    || |||||    
T  43378659 cacgtgtg 43378652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 23980460 - 23980414
Alignment:
Q  362 ttggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||||||||||| ||||||||||||||||| |||| ||| |||||    
T  23980460 ttggtcaattttgaattattcaacgcctacgtagcagaccacgtgtg 23980414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 396
Target Start/End: Original strand, 7674596 - 7674625
Alignment:
Q  367 caattttgacttattcaacgcctacgtggc 396  Q
    ||||||||||||||||||||||||||||||    
T  7674596 caattttgacttattcaacgcctacgtggc 7674625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 39152026 - 39152086
Alignment:
Q  341 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 402  Q
    |||||| ||||||||||||| |||||||||||||||  | |||| |||||||||||| ||||    
T  39152026 ccctttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgcca 39152086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 51684448 - 51684496
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| |||||| |||||| ||||||||||||| |||| ||||||||||    
T  51684448 cctaagatttagcccctttgcatctttggtccttttggccaattttgac 51684496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 52275074 - 52275130
Alignment:
Q  352 tttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||| |||| ||||||||||||||| || ||||||||| ||||||| |||| |||||    
T  52275074 tttgatccttttggtcaattttgacatagtcaacgcctgcgtggcatgccaagtgtg 52275130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 10006426 - 10006506
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  10006426 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 10006506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 10007782 - 10007702
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  10007782 cctaagatttagcccctttgcatctttggtccttttcgtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 10007702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 408
Target Start/End: Original strand, 1823555 - 1823715
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaattt-gatctcctaaaatttagtccctttac 348  Q
    ||||||| ||||||| |||||||  ||| ||||| ||||||||| | |  | |||||||||||| |||||||| | || ||||| |||||| || ||| |    
T  1823555 taaagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaatttcggtcccctaagatttagcccatttgc 1823654  T
Q  349 atcttt-ggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    || ||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1823655 attttttggtccttttggccaattttgatttattcaacgcctacgtggcaggccatgtgtg 1823715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 408
Target Start/End: Original strand, 1858000 - 1858160
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaattt-gatctcctaaaatttagtccctttac 348  Q
    ||||||| ||||||| |||||||  ||| ||||| ||||||||| | |  | |||||||||||| |||||||| | || ||||| |||||| || ||| |    
T  1858000 taaagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaatttcggtcccctaagatttagcccatttgc 1858099  T
Q  349 atcttt-ggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    || ||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1858100 attttttggtccttttggccaattttgatttattcaacgcctacgtggcaggccatgtgtg 1858160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 1824124 - 1824023
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| |||||||| |  | ||||| |||||| |  ||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1824124 taagtacaaaaactacaattttggccccctaagatttagccattttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggtaggc 1824025  T
Q  401 ca 402  Q
    ||    
T  1824024 ca 1824023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 1858569 - 1858468
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| |||||||| |  | ||||| |||||| |  ||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1858569 taagtacaaaaactacaattttggccccctaagatttagccattttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggtaggc 1858470  T
Q  401 ca 402  Q
    ||    
T  1858469 ca 1858468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 5514036 - 5514126
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctac 391  Q
    |||||||||||| |||||||| |  | |||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  5514036 taagtacaaaaactacaattttgcccccctaaaatttagcccctttgcatctttggtccttttgatcaattttgacttattcaatgcctac 5514126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 11456697 - 11456759
Alignment:
Q  334 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 396  Q
    |||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11456697 atttagccccattgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggc 11456759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 24123967 - 24123869
Alignment:
Q  280 aaaaatttgcaatttcggctt-ttaagtacaaaaattacaatttgatc-tcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| ||||||||| ||| | |||||||| ||||||||||||| | | |||||| |||||| |||||| ||||||||||||| |||||||||||||||    
T  24123967 aaaaacttgcaattttggcctcttaagtactaaaattacaattttagcctcctaagatttagcccctttgcatctttggtccttttggtcaattttgac 24123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 23169990 - 23169931
Alignment:
Q  348 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 407  Q
    |||||||  |||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  23169990 catctttaatccttttggtcaattttgacttattcaatgcctacgtggcagaccatgtgt 23169931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 30335694 - 30335769
Alignment:
Q  302 taagtacaaaaattacaatttgatctcc-taaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||||||||||||||||||| | | || ||| |||||| |||||| ||||||||||||| ||| |||||||||||    
T  30335694 taagtacaaaaattacaattttaaccccctaagatttagcccctttgcatctttggtccttttgttcaattttgac 30335769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 5514367 - 5514219
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaattt-gatctcctaaaatttagtccctttac 348  Q
    |||||||||||||| |||||| ||||| |||||| |||||||||  || || ||| |||||||| |||||||| || ||| |||||||||| || ||| |    
T  5514367 taaagtgcacttttatcccctaatttt-aaaaaacttgcaattttagccttctaaatacaaaaactacaattttgacctc-taaaatttagcccatttgc 5514270  T
Q  349 atctttggtcctattggtcaattttgacttattcaacgcctacgt-ggcaggccatgtgt 407  Q
    ||||||||||         ||||||||||||||||| |||||||| ||||||||| ||||    
T  5514269 atctttggtc---------aattttgacttattcaatgcctacgtgggcaggccacgtgt 5514219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 8389789 - 8389660
Alignment:
Q  249 gttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcgg-cttttaagtacaaaaattacaatttga-tctcctaaaatttagtcccttt 346  Q
    ||||||||||||||||  || ||||  ||| ||||| ||||||||| || |  ||| ||||||||| |||||||| | || ||||| |||||  ||||||    
T  8389789 gttaaagtgcacttttcccctcttaagtttcaaaaagttgcaattttggtcccttatgtacaaaaactacaattttagtcccctaagatttaaccccttt 8389690  T
Q  347 acatctttggtcctattggtcaattttgac 376  Q
    |||| ||||||||| |||  ||||||||||    
T  8389689 acatttttggtccttttgaacaattttgac 8389660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 322
Target Start/End: Complemental strand, 24361292 - 24361219
Alignment:
Q  249 gttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttttaagtacaaaaattacaattt 322  Q
    |||||||||||||||| | || |||||||||||||||||  | ||| | | | || ||||||||||||||||||    
T  24361292 gttaaagtgcacttttcttcctttatttttaaaaaatttcgattttggtcctctatgtacaaaaattacaattt 24361219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 30568960 - 30569016
Alignment:
Q  320 tttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||||| ||||| |||||| |||||| ||||||||||||| |||| ||||| ||||    
T  30568960 tttgatcccctaagatttagcccctttgcatctttggtccttttggccaattgtgac 30569016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 7500536 - 7500616
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7500536 cctaagatttagcccctttgcatctttgatccttttggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 7500616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 22629541 - 22629636
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 396  Q
    |||||||||||| |||||||| |  | ||||| |||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22629541 taagtacaaaaactacaattttggccccctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggc 22629636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 7501858 - 7501791
Alignment:
Q  341 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  7501858 ccctttgcatctttggtccttttggtcaattttgacttattcaatgcctacgtggcaggccacgtgtg 7501791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 18371478 - 18371585
Alignment:
Q  301 ttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcagg 399  Q
    ||||||||||||| |||||||| |  | ||||| ||||||  | ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18371478 ttaagtacaaaaactacaattttggccccctaagatttagcacatttgcatctttgatccttttggtcaattttgacttattcaacgcctacgtggcagg 18371577  T
Q  400 ccatgtgt 407  Q
    ||| ||||    
T  18371578 ccacgtgt 18371585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 18372503 - 18372408
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 396  Q
    |||||||||||| |||||||| |  | ||||| |||||| ||||||  |||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  18372503 taagtacaaaaactacaattttggccccctaagatttagcccctttgtatctttggtccttttggtcaattttgacttattcaacgtctatgtggc 18372408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 47369869 - 47369943
Alignment:
Q  334 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||| |||||| ||||||| ||  | ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  47369869 atttagcccctttgcatctttagttattttggtcaattttgacttattcaacgcctatgtggcaggccacgtgtg 47369943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 22630450 - 22630391
Alignment:
Q  349 atctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||||||||| |||||||||||||||||||||||||| || |||| |||||| |||||    
T  22630450 atctttggtccttttggtcaattttgacttattcaacgcttatgtggtaggccacgtgtg 22630391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 46482708 - 46482759
Alignment:
Q  357 tcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  46482708 tccttttggtcaattttgacttattcaatgcctacgtggcaagccatgtgtg 46482759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 43900488 - 43900428
Alignment:
Q  348 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||||| |||| ||| |||||||| | |||||||||||||||||| ||| |||||||||    
T  43900488 catctttgatccttttgatcaattttaatttattcaacgcctacgtgacagaccatgtgtg 43900428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 14998062 - 14998107
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaatttt 373  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||    
T  14998062 cctaagatttagcccctttgcatctttggtccttttggtcaatttt 14998107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 770780 - 770732
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    |||||||||||| |||||| |||||||| || | |||||||||||||||    
T  770780 cctaaaatttagcccctttgcatctttgatcattttggtcaattttgac 770732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 32253446 - 32253398
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| ||||||||||||| ||||||||||||| ||||  |||||||||    
T  32253446 cctaagatttagtccctttgcatctttggtccttttggcaaattttgac 32253398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 18486921 - 18486841
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  18486921 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 18486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 408
Target Start/End: Original strand, 19752966 - 19753073
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| |||||||| |  | ||||  |||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19752966 taagtacaaaaactacaattttggccccctatgatttagccccattgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggc 19753065  T
Q  401 catgtgtg 408  Q
    || |||||    
T  19753066 cacgtgtg 19753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 25524144 - 25524037
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| || ||||| || | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |    
T  25524144 taagtacaaaaactataattttgaccccctaagatttagcccctttgcatctttagtccttttggtcaattttgacttattcaacgcctacgtggcagac 25524045  T
Q  401 catgtgtg 408  Q
    || |||||    
T  25524044 cacgtgtg 25524037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 18485227 - 18485307
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18485227 cctaagatttagcccctttgcatctttgatccttttggttaattttgacttattcaacgcctacgtggcaggccacgtgtg 18485307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 22940720 - 22940563
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaatttgatctcctaaaatttagtccctttaca 349  Q
    ||||||||||||||  |||||||  ||| ||||| ||||||||| |||    |||||||||||||||||||||   | |||||||||||| |||||| ||    
T  22940720 taaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaattacaattttgacccctaaaatttagccccttttca 22940621  T
Q  350 tctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 407  Q
    |||||  |||| |||||||||||||||  | |||||||||| |||||| |||| ||||    
T  22940620 tcttttatccttttggtcaattttgaccaagtcaacgcctaagtggcatgccacgtgt 22940563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 25523124 - 25523219
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 396  Q
    |||||||||||| |||||||| || | ||||| |||||| |||||| |||||||| |||| ||| |||||||||| ||||||||||||||||||||    
T  25523124 taagtacaaaaactacaattttgaccccctaagatttagcccctttgcatctttgatccttttgatcaattttgatttattcaacgcctacgtggc 25523219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 24332914 - 24333074
Alignment:
Q  249 gttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcggctt-ttaagtacaaaaattacaattt-gatctcctaaaatttagtcccttt 346  Q
    ||||||||||||||||| |||||||  ||| ||||| ||||||||| |||   ||| ||||||||| |||||||| || |  |||| |||||  ||||||    
T  24332914 gttaaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaaccccttt 24333013  T
Q  347 acatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
     ||||||||||||| |||||||||||||||  | |||| |||||||||||| |||| |||||    
T  24333014 gcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtg 24333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 2686400 - 2686340
Alignment:
Q  348 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||    
T  2686400 catctttggtccttttgatcaattttgacttattcaacgcctacgtatcaggccatgtgtg 2686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 19754143 - 19754069
Alignment:
Q  334 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||| ||| || ||||||||||||| |||  ||||||||||||||||||||||||||||| |||||| |||||    
T  19754143 atttagccccattgcatctttggtccttttgaacaattttgacttattcaacgcctacgtggaaggccacgtgtg 19754069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 376
Target Start/End: Original strand, 2186774 - 2186900
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcgg-cttttaagtacaaaaattacaatttga-tctcctaaaatttagtccctttac 348  Q
    ||||||||| |||||||||| ||  ||| ||||| ||||||||| || ||| || ||||||||| |||||||| | || ||||| |||||| |  |||||    
T  2186774 taaagtgca-ttttttccccctaagtttcaaaaagttgcaattttggtcttctatgtacaaaaactacaattttaatcccctaagatttagccattttac 2186872  T
Q  349 atctttggtcctattggtcaattttgac 376  Q
    |||||||||||| |||||||||||||||    
T  2186873 atctttggtccttttggtcaattttgac 2186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 42195214 - 42195262
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||||||||    
T  42195214 cctaagatttagcccctttgcatctttggtccttttggtcaattttgac 42195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 16650047 - 16650122
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    |||||||||||| |||||||| || |  |||| |||||  |||||| ||||||||||||| |||||||||||||||    
T  16650047 taagtacaaaaactacaattttgaccctctaagatttaacccctttgcatctttggtccttttggtcaattttgac 16650122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 36486534 - 36486459
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    |||||||||||| |||||||| | || ||||| ||||||||||||| || ||||| |||| || ||||||||||||    
T  36486534 taagtacaaaaactacaattttggtcccctaagatttagtccctttgcaactttgatcctttttgtcaattttgac 36486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 42196219 - 42196171
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  42196219 cctaagatttagcccatttgcatctttggtccttttggtcaattttgac 42196171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 7314961 - 7315041
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  7314961 cctaagatttagcccctttgcatctttggtcattttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 7315041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 7316307 - 7316233
Alignment:
Q  334 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  7316307 atttagcccctttgcatctatggtccttttggtcaattttgacttattcaacgcctacgtggcaagccacgtgtg 7316233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 17496895 - 17496943
Alignment:
Q  343 ctttacatctttggtcctattggtcaattttgacttattcaacgcctac 391  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  17496895 ctttgcatctttggtccttttgatcaattttgacttattcaacgcctac 17496943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 1829703 - 1829574
Alignment:
Q  249 gttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaattt-gatctcctaaaatttagtcccttt 346  Q
    |||||||||||||||||||||| ||  ||| ||||| ||||||||| | |    |||||| ||||| |||||||| |  | ||||| |||||| ||||||    
T  1829703 gttaaagtgcacttttttccccctaacttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttggccccctaagatttagccccttt 1829604  T
Q  347 acatctttggtcctattggtcaattttgac 376  Q
     ||||||||||| | |||||||||||||||    
T  1829603 gcatctttggtcattttggtcaattttgac 1829574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 1828742 - 1828814
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggc-ttttaagtacaaaaattacaattt 322  Q
    ||||||||| ||||| ||| ||| |||| ||||||||||||||| ||| |||||||| ||||||||| |||||    
T  1828742 taaagtgcattttttcccctttaatttttaaaaatttgcaattttggctttttaagttcaaaaattataattt 1828814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 14823674 - 14823630
Alignment:
Q  251 taaagtgcactttttt-ccccttatttttaaaaaatttgcaattt 294  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||    
T  14823674 taaagtgcacttttttcccccttaattttaaaaaacttgcaattt 14823630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 47615596 - 47615516
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  47615596 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaatgcctacgtggcaggccacgtgtg 47615516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 408
Target Start/End: Original strand, 12700228 - 12700335
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| |||||||| || | ||||  |||||| | | || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12700228 taagtacaaaaactacaattttgaccccctatgatttagccacattgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggc 12700327  T
Q  401 catgtgtg 408  Q
    || |||||    
T  12700328 cacgtgtg 12700335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 34019164 - 34019084
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||||||||||  | ||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||    
T  34019164 cctaaaatttagctcatttgcatctttggtccttttggtcaattttgatttattcaacgcctacgtgacaggccacgtgtg 34019084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 47614267 - 47614347
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| | |||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  47614267 cctaagatttagcctctttgcatctttggtgcttttggttaattttgacttattcaacgcctacgtggcaggccacgtgtg 47614347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 8876012 - 8876062
Alignment:
Q  352 tttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 402  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  8876012 tttggtccttttagtcaattttgacttattcaacgcctacgtggcaggcca 8876062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 11670472 - 11670546
Alignment:
Q  334 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||||||| || ||| ||| ||||| ||| |||||||||||||||||||||| |||||||||||||| |||||    
T  11670472 atttagtcccattgcattttttgtccttttgatcaattttgacttattcaacgcttacgtggcaggccacgtgtg 11670546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 23770507 - 23770346
Alignment:
Q  249 gttaaagtgcacttttttccccttatttttaaaaaatttgcaatttcgg-cttttaagtacaaaaattacaatttga-tctcctaaaatttagtcccttt 346  Q
    ||||||||||| |||| |||||||| |||||||||| || |||||| || |  ||| ||||||||| |||||||| |  | ||||| |||||  ||||||    
T  23770507 gttaaagtgcaattttctccccttaattttaaaaaagttacaattttggtcccttatgtacaaaaactacaattttagccccctaagatttaaccccttt 23770408  T
Q  347 acatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
     ||||||| ||||| |||||||| ||||||  | ||||||| || |||||| |||| |||||    
T  23770407 gcatctttagtccttttggtcaactttgaccaagtcaacgcatatgtggcatgccacgtgtg 23770346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 11671347 - 11671299
Alignment:
Q  341 ccctttacatctttggtcctattggtcaattttgacttattcaacgcct 389  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  11671347 ccctttacatctttggtccttttgatcaattttgatttattcaacgcct 11671299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 12703546 - 12703439
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||| |||||||| |  | ||||  |||||| ||| || ||||||||||| | |||   ||||||||||||||||||||||||||||||| |    
T  12703546 taagtacaaaaactacaattttggccccctatgatttagccccattgcatctttggtcattttgaataattttgacttattcaacgcctacgtggcagac 12703447  T
Q  401 catgtgtg 408  Q
    || |||||    
T  12703446 cacgtgtg 12703439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 52105686 - 52105627
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgc 387  Q
    |||||||||||| | |||||||||||||||||| |||| ||||||||||||  |||||||    
T  52105686 cctaaaatttagcctctttacatctttggtccttttggccaattttgacttggtcaacgc 52105627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 407
Target Start/End: Original strand, 7758405 - 7758563
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttt-taagtacaaaaattacaatttgatctcc-taaaatttagtccctttac 348  Q
    ||||||||||||||| |||||||  ||| ||||| ||||||||| | |    |||||||||||| ||||||||   | || ||| |||||  ||||||      
T  7758405 taaagtgcactttttcccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaatttttgccccctaagatttaacccctttgt 7758504  T
Q  349 atctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 407  Q
    |||||||||||| ||||||||||||||| || ||||||| || |||||| |||| ||||    
T  7758505 atctttggtccttttggtcaattttgacctagtcaacgcttaagtggcatgccacgtgt 7758563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 398
Target Start/End: Original strand, 6249663 - 6249760
Alignment:
Q  301 ttaagtacaaaaattacaatttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcag 398  Q
    ||||||||||||| |||||||| ||| | ||| |||||||| | || ||  |||| |||| ||| ||||||||||| || |||||| |||||||||||    
T  6249663 ttaagtacaaaaactacaattttatcccttaagatttagtctcattgcaaatttgatccttttgatcaattttgacctagtcaacgtctacgtggcag 6249760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 17776836 - 17776800
Alignment:
Q  362 ttggtcaattttgacttattcaacgcctacgtggcag 398  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17776836 ttggtcaattttgacttattcaacgcctatgtggcag 17776800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 19078137 - 19078101
Alignment:
Q  362 ttggtcaattttgacttattcaacgcctacgtggcag 398  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19078137 ttggtcaattttgacttattcaacgcctatgtggcag 19078101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 19984944 - 19985004
Alignment:
Q  341 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 402  Q
    |||||| ||||||||||||| |||||||||||||||  | |||| |||||||||||| ||||    
T  19984944 ccctttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgcca 19985004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 8593125 - 8593085
Alignment:
Q  368 aattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  8593125 aattttgacttattcaacgcctatgtggcagaccacgtgtg 8593085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 46721263 - 46721191
Alignment:
Q  305 gtacaaaaattacaatttga-tctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||||||| |||||||| | || ||||| |||||| |||||| ||| |||||||||  ||||||||||||||    
T  46721263 gtacaaaaactacaattttagtcccctaagatttagcccctttgcatatttggtccttctggtcaattttgac 46721191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 19543 - 19644
Alignment:
Q  302 taagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||| ||||| |||||||| |||| ||||| |||||  |||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||    
T  19543 taagtataaaaactacaattttgatcccctaagatttaacccctttgcatctttgatcattttggtcaattttgacttattcaacgcctacgtggcaggc 19642  T
Q  401 ca 402  Q
    ||    
T  19643 ca 19644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 18906033 - 18905927
Alignment:
Q  302 taagtacaaaaattacaatttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcc 401  Q
    |||||||||||| |||||||| | | ||||| ||||||  | ||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||    
T  18906033 taagtacaaaaactacaattttagcccctaagatttagctcatttgcatctttggtctttttgatcaattttgacttattcaacgcctacgtggcagacc 18905934  T
Q  402 atgtgtg 408  Q
    | |||||    
T  18905933 acgtgtg 18905927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 13030344 - 13030445
Alignment:
Q  302 taagtacaaaaattacaatttgatctcc-taaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggc 400  Q
    |||||||||||||||||||||   | || ||| ||||||  | ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  13030344 taagtacaaaaattacaatttttgccccctaagatttagctcttttgcatctttggtcattttggtcaattttgacttattcaacgcctacgtggcaggc 13030443  T
Q  401 ca 402  Q
    ||    
T  13030444 ca 13030445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 22848273 - 22848353
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    ||||| |||||| |||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||    
T  22848273 cctaagatttagcccctttgcagctttggtccttttgatcaattttgacttattcaacgcctacgtggcaagccacgtgtg 22848353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 18869209 - 18869101
Alignment:
Q  302 taagtacaaaaattacaatttg-atctcctaaaatttagtcccttta-catctttggtcctattggtcaattttgacttattcaacgcctacgtggcagg 399  Q
    |||||||||||| ||||||||  ||| ||||| |||||| || |||  ||||||||||| | ||| ||||||||||||||||||||||||| ||||||||    
T  18869209 taagtacaaaaactacaatttttatcccctaagatttagcccattttgcatctttggtctttttgatcaattttgacttattcaacgcctatgtggcagg 18869110  T
Q  400 ccatgtgtg 408  Q
    ||| |||||    
T  18869109 ccacgtgtg 18869101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 21837124 - 21837191
Alignment:
Q  331 aaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcag 398  Q
    ||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||||    
T  21837124 aaaatttagcccctttgcatctttggtcattttgatcaattttgacttattcaacgcctacatggcag 21837191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 28617978 - 28618083
Alignment:
Q  303 aagtacaaaaattacaatttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 402  Q
    ||||||||||| | ||||||   | ||||| |||||| |||||| ||||||||||  | |||||| ||||||||| |||||| ||||||||||||| |||    
T  28617978 aagtacaaaaacttcaattttgccccctaagatttagcccctttgcatctttggttattttggtctattttgactaattcaatgcctacgtggcagacca 28618077  T
Q  403 tgtgtg 408  Q
     |||||    
T  28618078 cgtgtg 28618083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 384
Target Start/End: Original strand, 18904370 - 18904505
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggctt-ttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttac 348  Q
    ||||||||||||||  |||||||  ||| |||||  |||||||| |||   ||||||||||||| |||||||| | |  ||||| | |||| ||||||||    
T  18904370 taaagtgcacttttccccccttaactttcaaaaacgtgcaattttggccccttaagtacaaaaactacaattttggttccctaagaattagcccctttac 18904469  T
Q  349 atctttggtcctattggtcaattttgacttattcaa 384  Q
    |||||||||||| |||| ||||||| ||||| ||||    
T  18904470 atctttggtccttttggccaattttaacttagtcaa 18904505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 397
Target Start/End: Original strand, 26544152 - 26544299
Alignment:
Q  251 taaagtgcacttttttccccttatttttaaaaaatttgcaatttcggcttttaagtacaaaaattacaatttga-tctcctaaaatttagtccctttaca 349  Q
    |||||||||||||| | ||| || |||| |||||||| |||||| || |  |||||||||||| |||| ||| |  ||||||| ||||||  ||||| ||    
T  26544152 taaagtgcacttttctacccctaatttttaaaaatttacaattttggttcctaagtacaaaaactacagttttagcctcctaagatttagcacctttgca 26544251  T
Q  350 tctttggtcctattggtcaattttgacttattcaacgcctacgtggca 397  Q
    | ||||||||| ||| |||||||||||  | ||||||| || ||||||    
T  26544252 tatttggtccttttgatcaattttgaccaagtcaacgcatatgtggca 26544299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 18300770 - 18300697
Alignment:
Q  302 taagtacaaaaattacaatttgatctcctaaaatttagtccctttacatctttggtcctattggtcaattttga 375  Q
    |||||||||||| ||||||||   | |||| ||||||| |||||| ||||||||||||| |||| |||||||||    
T  18300770 taagtacaaaaactacaattttgacccctataatttagcccctttgcatctttggtccttttggacaattttga 18300697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 11996765 - 11996837
Alignment:
Q  305 gtacaaaaattacaatttgatctc-ctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||||||| |||||||| |  || |||| |||||  |||||||||||||||||||| |||||||||||||||    
T  11996765 gtacaaaaactacaattttagttctctaagatttaacccctttacatctttggtccttttggtcaattttgac 11996837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 18797329 - 18797409
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 408  Q
    |||||||||||| |||||| ||||||||||||| || | ||||||||||||  ||||||| ||  ||||| |||| |||||    
T  18797329 cctaaaatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtg 18797409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 408
Target Start/End: Complemental strand, 26545568 - 26545460
Alignment:
Q  301 ttaagtacaaaaattacaattt-gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcagg 399  Q
    |||| ||||||||||| ||||| || |  |||| |||||| |||||| ||||||||||| | ||| |||||||||||  | ||||||| || |||||| |    
T  26545568 ttaaatacaaaaattataattttgaccctctaagatttagcccctttgcatctttggtcattttgatcaattttgaccaaatcaacgcatatgtggcatg 26545469  T
Q  400 ccatgtgtg 408  Q
    ||| |||||    
T  26545468 ccacgtgtg 26545460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 1521 - 1569
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  1521 cctaagatttagcccatttgcatctttggtccttttggtcaattttgac 1569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 4496 - 4572
Alignment:
Q  301 ttaagtacaaaaattacaatttga-tctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    |||||||||||||||||||||| |  | |||||||||||| ||| |||||  ||||||| | |||||| ||||||||    
T  4496 ttaagtacaaaaattacaattttacccccctaaaatttagccccattacaaatttggtcattttggtcgattttgac 4572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 48389 - 48436
Alignment:
Q  328 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 376  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||||||    
T  48389 cctaagatttattccctttgcatctttggtcct-ttggtcaattttgac 48436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University