View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11524_low_3 (Length: 332)
Name: NF11524_low_3
Description: NF11524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11524_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 59 - 322
Target Start/End: Complemental strand, 2223710 - 2223448
Alignment:
| Q |
59 |
tgtttgatatggtaccaaaagcagttcaaataccataaatgtattttgcttcttaattnnnnnnnnnncaaactattattctagttaattacttgttaga |
158 |
Q |
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| T |
2223710 |
tgttggatatggtaccaaaagcagttcaaataccataaatgtattttgcttcttaattaaaaaaaaaacaaaccattattctatttaattacttgttaga |
2223611 |
T |
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| Q |
159 |
taagcaatatgcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgttt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223610 |
taagcaatatgcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgttt |
2223511 |
T |
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| Q |
259 |
agtttgcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccctatg |
322 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2223510 |
ag-ttgcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttatg |
2223448 |
T |
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