View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11524_low_4 (Length: 303)
Name: NF11524_low_4
Description: NF11524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11524_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 6227176 - 6226884
Alignment:
| Q |
18 |
tataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcattgccgaaacctgtagatagata |
117 |
Q |
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| T |
6227176 |
tataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcattgccgaaacctgtagatatata |
6227077 |
T |
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| Q |
118 |
----------------ttgattgacatgaaaattgtgattgcaaaatagtgaaaacttatatggggagataactaatagaaaaaacggaaaagcgaaatc |
201 |
Q |
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| T |
6227076 |
gatacagatcattagattgattgacatgaaaattgtgattgcaaaatagtgaaaacttatatggg-agataactaatagaaaaaacggaaaagcgaaatc |
6226978 |
T |
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| Q |
202 |
cttactgtcatgtgcaaaccaccatgagggatcgcgaacagaggagatcgtagtgccgacgtctccacaccgtgacttcatcgttttcatctca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226977 |
cttactgtcatgtgcaaaccaccatgagggatcgcgaacagaggagatcgtagtgccgacgtctccacaccgtgacttcatcgttttcatctca |
6226884 |
T |
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