View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11524_low_5 (Length: 233)
Name: NF11524_low_5
Description: NF11524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11524_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2223538 - 2223307
Alignment:
| Q |
1 |
tctttatgaaaattaagtgtacatttttagtttgtttaattgtaagnnnnnnnatatctaatgagtcaccattaattacccatccccttatgatctcgtg |
100 |
Q |
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||||||||| |||||||||||||| ||||||| | ||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||| |
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| T |
2223538 |
tctttatgagaattaagtgtacatgtttagtt-gcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttatgatctcgtg |
2223440 |
T |
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| Q |
101 |
aaagtggccccgctacaccgccactacaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223439 |
aaagtggcaccgctacaccgccactacaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgt |
2223340 |
T |
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| Q |
201 |
cgaacccacggtattcccatcaacctcatcacc |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2223339 |
cgaacccacggtattcccatcaacctcatcacc |
2223307 |
T |
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