View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11525_high_1 (Length: 943)
Name: NF11525_high_1
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 489 - 929
Target Start/End: Complemental strand, 29841558 - 29841118
Alignment:
| Q |
489 |
caccattctttgacttacacctttcaagaaagtcaacattttcataagatttgcaaattcatagtatttgatcatttgtcaccattgagatggttagaat |
588 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841558 |
cacccttctttgacttacacctttcaagaaagtcaacattttcataagatttgcaaattcatagtatttgatcatttgtcaccattgagatggttagaat |
29841459 |
T |
|
| Q |
589 |
gagtttgtgtcacttttatgttttctgttctccaagaagagtccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatgt |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841458 |
gagtttgtgtcacttttatgttttctgttctccaagaagagtccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatgt |
29841359 |
T |
|
| Q |
689 |
tggagctgtctccatgatcctgttataaaatataaaatattgttttcattagtcctcttctttttcatttaccacaagaatgattattaaattgcagtta |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841358 |
tggagctgtctccatgatcctgttataaaatataaaatattgttttcattagtcctcttctttttcatttaccacaagaatgattattaaattgcagtta |
29841259 |
T |
|
| Q |
789 |
ggtaacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcgcggtttattcgcaccttgcttgaagtatccttaggaatttttt |
888 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841258 |
ggaaacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcacggtttattcgcaccttgcttgaagtatccttaggaatttttt |
29841159 |
T |
|
| Q |
889 |
cagagagatatttcatggtcccccaaagtggtggatttctg |
929 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841158 |
cagagagatatttcatggtcccccaaagtggtggatttctg |
29841118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 489 - 929
Target Start/End: Original strand, 29829977 - 29830420
Alignment:
| Q |
489 |
caccattctttgacttacacctttcaagaaagtcaacattttcataagatttgcaaattcatagtatttgatcatttgtcaccattgagatggttagaat |
588 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29829977 |
cacccttctttgacttgcacctttcaagaaagtcaacattttcataagatttgcaaattcctagtatttgatcatttgtcaccattgagatggttagaat |
29830076 |
T |
|
| Q |
589 |
gagtttgtgtcacttttatgttttctgttctccaagaagagt-ccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatg |
687 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29830077 |
gagtttgtgtcaattttatgttctcagttctccaagaagagtcccactggtggaagttgatattcatctggtttcaatgccaaggaaaattcaggcaaag |
29830176 |
T |
|
| Q |
688 |
ttggagctgtctccatgatcctgttataaaatata-aaatattgttttcattagtcctcttctttttcatttaccacaagaatgattattaaattgcagt |
786 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | | ||||| || | |||||||| ||||||||||| ||| ||||||||||| || | |||||| |
|
|
| T |
29830177 |
ttggagctgtctccatgatcctgtcgtaaaatacagcagtattgcttacgttagtccttttctttttcatgtactacaagaatgatcatcagattgcaaa |
29830276 |
T |
|
| Q |
787 |
taggtaacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcgcggtttattcgcaccttgcttgaagtatccttaggaa-ttt |
885 |
Q |
| |
|
|||| ||| || ||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
29830277 |
taggaaaccagattagtcatgaactctggaaaatttacctttcgtgggtgtacagatcgcggtttattcgcaccttgcttgaagtatccttgggaatttt |
29830376 |
T |
|
| Q |
886 |
tttcagagagatatttcatggtcccccaaagtggtggatttctg |
929 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29830377 |
tttcagaaagatatttcatggtcccccaaagtggtggatttctg |
29830420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 137 - 426
Target Start/End: Complemental strand, 29841911 - 29841621
Alignment:
| Q |
137 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttctttacacactttgcgcttgtattatacttgt |
236 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29841911 |
gatgatcaacattccgaatatttcattcaatcacaaaaccacctcttcgtgaaaatacataggtttttctttacacactttgtgcttgtattatacttgt |
29841812 |
T |
|
| Q |
237 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatcaatgatgtaactgtcttta-tttattggtatatattg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29841811 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatgaatgatgtaactgtctttattttattggtatatattg |
29841712 |
T |
|
| Q |
336 |
ggaaggatcccctttctttttccctgagtgtcaaatttttattaaagccaatggaagctctactttcaaggtatctttgaattatgtgatc |
426 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841711 |
ggaaggatcccctttctttttccttgagtgtcaaattttcattaaagccaatggaagctctactttcaaggtatctttgaattatgtgatc |
29841621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 137 - 423
Target Start/End: Original strand, 29829573 - 29829861
Alignment:
| Q |
137 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttcttt--acacactttgcgcttgtattatactt |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
29829573 |
gatgatcaacattctgaatattccattcaaccacaaaaccaactcttggtgaaaatacataggtttttttttccacacactttgtgcttgtattatactt |
29829672 |
T |
|
| Q |
235 |
gtttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatcaatgatgtaactgtctttatttattggtatatatt |
334 |
Q |
| |
|
||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29829673 |
gtttcaccccaatgcacaggtcaattttacacacaaccacttgcaaaaattctgtatattaaatgaatgatgtaactgactttatttattggtatatatt |
29829772 |
T |
|
| Q |
335 |
gggaaggatcccctttctttttccctgagtgtcaaatttttattaaagccaatggaagctctactttcaaggtatctttgaattatgtg |
423 |
Q |
| |
|
| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29829773 |
gagaaggatcccctttccttttccttgagtgtcaaattttcattaaagccaatggaagttctactttcaaggtatctttgaattatgtg |
29829861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 29842054 - 29841964
Alignment:
| Q |
49 |
tgaatggctccatgcagaggttaggtatatgaaatcaattcatataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29842054 |
tgaatggctccatgcagaggttaggtatatgaaatcaattcgtataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
29841964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 29829447 - 29829509
Alignment:
| Q |
77 |
atgaaatcaattcatataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
139 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29829447 |
atgaaatcaattcgtataaaaagcggaatcaatgtactcaatcacaaaagtagcttggaggat |
29829509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 819 - 929
Target Start/End: Original strand, 34623877 - 34623987
Alignment:
| Q |
819 |
atttacctttcgtgagtgtatagatcgcggtttattcgcaccttgcttgaagtatccttaggaattttttcagagagatatttcatggtcccccaaagtg |
918 |
Q |
| |
|
|||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
34623877 |
atttacctctcgtaagtatatagatcacggtttattcgcaccttgcttgaagtatccttgggaattttctcagagagatatttcatggtcccccaaagcg |
34623976 |
T |
|
| Q |
919 |
gtggatttctg |
929 |
Q |
| |
|
||||||||||| |
|
|
| T |
34623977 |
gtggatttctg |
34623987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 609 - 717
Target Start/End: Original strand, 34623642 - 34623750
Alignment:
| Q |
609 |
ttttctgttctccaagaagagtccactagtggaagttggtattcatctggtttcaatgccaaggaaaattcaggcaatgttggagctgtctccatgatcc |
708 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| || |||||||||||||| ||||||| ||| |||||||||||||| ||||| |||||||| | |
|
|
| T |
34623642 |
ttttctgttctccaagaaggactcacttgtggaagttgataatcatctggtttcaaggccaaggcaaaatcaggcaatgttggtgctgtttccatgattc |
34623741 |
T |
|
| Q |
709 |
tgttataaa |
717 |
Q |
| |
|
||| ||||| |
|
|
| T |
34623742 |
tgtaataaa |
34623750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University