View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11525_high_14 (Length: 316)
Name: NF11525_high_14
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 46417290 - 46417574
Alignment:
| Q |
17 |
aataataatacacttgcagtgttattagtgtgcaatgtacatgtcaattaatactacatttcatttcgctaatgtattatacatagcatagtagcctgtg |
116 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46417290 |
aataataatatacttgtagtgttattagtgtgcaatgtacatgtcaattaatattacatttcatttcgctaatgtattatacatagcatagtagcttgtg |
46417389 |
T |
|
| Q |
117 |
tcttcataagagcggagctcagcttctgtatctgtagttctgcttctaatcctgtaaaatagtaaaaaccgctatgaaagtatgaaacgagaaaaaccac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46417390 |
tcttcataagagcggagctcagcttctgtatctgtagttctgcttctaatcctgtaaaatagtaaaaaccgctatgaaagtatgaaacgagaaaaaccac |
46417489 |
T |
|
| Q |
217 |
tgtctctgaagtttacactgtcacatcaaacaggtaatgaagtgaataaattgcatgcaaccctcaccctgaagtacttgttgat |
301 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46417490 |
tgtttctgaagttgacactgtcacatcaaacaggtaatgaagtgaataaattgcatgcaaccctcaccctgaagtacttgttgat |
46417574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University