View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_high_5 (Length: 496)
Name: NF11525_high_5
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 35042445 - 35041973
Alignment:
| Q |
19 |
agaaagatgtactgataatgtcaacgacactcctcttttggatggaagtcaggtgagtgccacatgatgttgatatgactattacactaacattagtttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
35042445 |
agaaagatgtactgataatgtcaacgacactcctcttttggatggaagtcaggtgagtgccacatgatgttgatatcactattacactaacattcgtttt |
35042346 |
T |
|
| Q |
119 |
ctgttcttttctgatcattttatcattcttcacgataactgaaatggctacatttctttttatctgttagtaatgcatcttattatctcatccgataagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35042345 |
ctgttcttttctgatcattttatcattcttcacgataactgaaatggctacatttctttttatctgctagtaatgcatcttattatctcatccgataagt |
35042246 |
T |
|
| Q |
219 |
ttggttatttcaatactcatctccttgcaattcctttgactattatttcatttcacaaattgtcaatttttctctcttatgatnnnnnnntaaatgagct |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35042245 |
ttggttatttcaatactcgtctccttgcaattcctttcactattatttcatttcacaaattgtcaatttttctctcttatgataaaaaaataaatgagct |
35042146 |
T |
|
| Q |
319 |
agatcttatcaaatattgtgaaaaattatcaagagagattgatataaatttattttctcaggtgtaatattaactctagagctttcatttccgacaagtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042145 |
agatcttatcaaatattgtgaaaaattatcaagagagattgatataaatttattttctcaggtgtaatattaactctagagctttcatttccgacaagtt |
35042046 |
T |
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| Q |
419 |
tataatattttgcttagaaccatttagaaataaaacctcaagtgaattctggccctatagtgtcccccctatg |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35042045 |
tataatattttgcttagaaccatttagaaataaaacctcaagtgaattctggccctatagtgttccccctatg |
35041973 |
T |
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