View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_high_8 (Length: 457)
Name: NF11525_high_8
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 22 - 424
Target Start/End: Original strand, 50983280 - 50983682
Alignment:
| Q |
22 |
cacgaaatcgaagaaaccctcaaatcgaaacaagcgaaaacgaattcgaatctcaaaacccaatcaactttccaccacctcgaacaccgttaaattccat |
121 |
Q |
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| T |
50983280 |
cacgaaatcgaagaaaccctcaaatcgaaacaagcgaaaacgaattcgaatctcaaaacccaatcaactttccaccacctcgaacaccgttaaattccat |
50983379 |
T |
|
| Q |
122 |
acccgatccatctcagtatcatgaacctgaacttcttcgatacgctcgttcttcctccgatcggttcgtgaacactccttccattcggattccaaaacct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50983380 |
acccgatccatctcagtatcatgaacctgaacttcttcgacacgctcgttcttcctccgatcggttcgtgaacactccttccattcggattccaaaacct |
50983479 |
T |
|
| Q |
222 |
cattccgaacctaactctgctcagagcacaccagctagaaattcttcacgagtttcactcggtggtgggggaggaagcagtagagtgagcttaggaaaag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50983480 |
cattccgaacctaactctgctcagagcacaccagctagaaattcttcacgagtttcactcggtggtggaggaggaagcagtagagtgagcttaggaaaag |
50983579 |
T |
|
| Q |
322 |
gatttctgaaaggaactgacataatttcaactgaagttcagcattttgaacttaaacatgatccttcgttttggatggatcataatgtacaggtacgtgt |
421 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50983580 |
gatttctgaaaggaactgacataatttcaacggaagttcagcattttgaacttaaacatgatccttcgttttggatggatcataatgtacaggtacgttt |
50983679 |
T |
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| Q |
422 |
tta |
424 |
Q |
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| T |
50983680 |
tta |
50983682 |
T |
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