View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11525_low_10 (Length: 447)

Name: NF11525_low_10
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11525_low_10
NF11525_low_10
[»] chr5 (1 HSPs)
chr5 (18-439)||(500094-500510)
[»] chr7 (5 HSPs)
chr7 (110-337)||(25436331-25436558)
chr7 (100-337)||(25484271-25484508)
chr7 (100-337)||(25636512-25636749)
chr7 (102-337)||(25442322-25442557)
chr7 (101-198)||(25478952-25479049)
[»] chr2 (6 HSPs)
chr2 (100-211)||(35105988-35106099)
chr2 (100-211)||(35169648-35169759)
chr2 (100-195)||(35177955-35178050)
chr2 (113-210)||(35055076-35055173)
chr2 (108-192)||(35047044-35047128)
chr2 (100-177)||(35183971-35184048)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 500510 - 500094
Alignment:
Q  18 cagataggtgcaatgcctaagcgacggttttgggatctgtcaagttgtagttcttcttctaatagcagcatccaaagctaatctatagatatgatgtgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||    
T  500510 cagataggtgcaatgcctaagcgacggttttgggatctgtcaagttgtagttcttcttctaatagcagcatccaaagcta-----tagatatgatgtgtt 500416  T
Q  118 tatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacag 217  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  500415 tatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacag 500316  T
Q  218 ctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatccacat 317  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  500315 ctcaacaaaggtcattctatttcaactcaacttcttcatgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatcaacat 500216  T
Q  318 ggtgtttggatgaaatggctacaattgctgattgccggttaaatttgaaacaaactgttttctatgatgttgctccgtctgatgtacgaaaacagaaagg 417  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  500215 ggtgtttggatgaaatggctacaattgctgattgccagttaaatttgaatcacactgttttctatgatgttgctccgtctgatgtgcgaaaacagaaagg 500116  T
Q  418 tttttatcaggatgcctttgct 439  Q
    | |||||||| ||| |||||||    
T  500115 tgtttatcagaatgtctttgct 500094  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 337
Target Start/End: Complemental strand, 25436558 - 25436331
Alignment:
Q  110 gatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatg 209  Q
    |||||||| ||||||||||||||||| || || |||||  |||||| |||||||||| |  |||||||  |||||||||||||||| ||||| |||||||    
T  25436558 gatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttaccttcaaggatg 25436459  T
Q  210 atgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttc 309  Q
    |    |||||| | |||||     | |||||| | |||||||| |  ||||||||||  ||||| |||| ||| ||| ||||||||| ||||||||||||    
T  25436458 acaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgtatcattgttttctcaagagattatgcttc 25436359  T
Q  310 atccacatggtgtttggatgaaatggct 337  Q
    ||| ||||||||||||||||||||||||    
T  25436358 atcaacatggtgtttggatgaaatggct 25436331  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 100 - 337
Target Start/End: Original strand, 25484271 - 25484508
Alignment:
Q  100 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 199  Q
    ||||||||| |||||||| |||||||| |||||||| ||||| || ||  | |||| ||| |||||||| |||||||||| |||||||||||||||||||    
T  25484271 ctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtattttcacc 25484370  T
Q  200 tttaaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaag 299  Q
    || ||||||||    |||||  | |||||     | |||||| | |||||||| |  ||||||| ||| |||||  |||||||  || ||||||| ||||    
T  25484371 ttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttctccaaag 25484470  T
Q  300 attatgcttcatccacatggtgtttggatgaaatggct 337  Q
    |||||||||| || ||||||||||||||||||||||||    
T  25484471 attatgcttcttcaacatggtgtttggatgaaatggct 25484508  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 337
Target Start/End: Original strand, 25636512 - 25636749
Alignment:
Q  100 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 199  Q
    ||||| ||||||||| ||||||||||| |||||| | ||||| |||||||| |||| ||| ||||||||||||||||||| ||||||||||||||  |||    
T  25636512 ctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgacc 25636611  T
Q  200 tttaaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaag 299  Q
    || ||||||||   |  |||  | |||||    || ||||||   |||||| | |  ||||||  | | || || |||||||| ||| | ||||| ||||    
T  25636612 ttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaag 25636711  T
Q  300 attatgcttcatccacatggtgtttggatgaaatggct 337  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25636712 attatgcttcatcaacatggtgtttggatgaaatggct 25636749  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 337
Target Start/End: Original strand, 25442322 - 25442557
Alignment:
Q  102 atagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctt 201  Q
    ||||||| |||||||| ||||||||||||||| | ||||| |||||  | |||| ||| |||||||| | |||||||| ||||||||||||||||  |||    
T  25442322 atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt 25442421  T
Q  202 taaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagat 301  Q
     ||||||||   |  |||  | |||||    || ||||||   |||||| | |  ||||||  | | || || |||||||| ||| | ||||| ||||||    
T  25442422 caaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaagat 25442521  T
Q  302 tatgcttcatccacatggtgtttggatgaaatggct 337  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25442522 tatgcttcatcaacatggtgtttggatgaaatggct 25442557  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 25479049 - 25478952
Alignment:
Q  101 tatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcac 198  Q
    |||||||| || |||||||||||||| ||||||   ||||| || || || |||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  25479049 tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcac 25478952  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 35106099 - 35105988
Alignment:
Q  100 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 199  Q
    ||||||||| || |||||||||||||| |||||| | ||||| |||||||||||||  |||||||| ||||||||||| |  ||||| ||||||||  ||    
T  35106099 ctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttgcc 35106000  T
Q  200 tttaaggatgat 211  Q
    || |||||||||    
T  35105999 ttcaaggatgat 35105988  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 35169759 - 35169648
Alignment:
Q  100 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 199  Q
    ||||| ||| ||||||||||||||||| |||||  | ||||| || |||||||||| ||||||||| ||||||||||| | |||||| ||| ||||| ||    
T  35169759 ctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgcc 35169660  T
Q  200 tttaaggatgat 211  Q
    || |||||||||    
T  35169659 ttcaaggatgat 35169648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 35178050 - 35177955
Alignment:
Q  100 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtatttt 195  Q
    ||||| ||| || |||||||||||||| |||||| | ||||| ||||||||||||| ||||||||| ||||||||||| |  ||||||||||||||    
T  35178050 ctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttt 35177955  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 35055173 - 35055076
Alignment:
Q  113 gtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatga 210  Q
    ||||| ||||||||||||||| | ||||| ||||| | ||||| ||||||||| ||||||||||| |  ||||||||||||||  |||| ||||||||    
T  35055173 gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatga 35055076  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 35047128 - 35047044
Alignment:
Q  108 atgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtat 192  Q
    ||||||||||||||||||| |||||  ||||||| |||||||||||    ||||||||||||  ||||||||| |||||||||||    
T  35047128 atgatgtgtttatcagtttcagaggcaccgacactcgcaacactttcatcgatcatctctatcatcatctcatcagaaaaggtat 35047044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 35184048 - 35183971
Alignment:
Q  100 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatct 177  Q
    |||||||||||||||||||||||||||  | ||| | ||||| |||| |||||||| |||||||||  ||||||||||    
T  35184048 ctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatct 35183971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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