View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_low_11 (Length: 432)
Name: NF11525_low_11
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 222 - 419
Target Start/End: Original strand, 7622220 - 7622417
Alignment:
| Q |
222 |
atgatggtgcagaacaatgatggtgtatctggcaatagtaatattttcttaccgtttggaggaggaccaagattatgcgcaggatcagaattagcaaagc |
321 |
Q |
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| T |
7622220 |
atgatggtgcagaacaatgatggtgcatctggcaatagtaatattttcttaccgtttggaggaggaccaagattatgcgcaggatcagaattagcaaagc |
7622319 |
T |
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| Q |
322 |
ttgaaatggctgttttcattcaccatctcatcctcaactacaattgggaattgactgataataacgatcaagcttttgcatatccttttgttgatttt |
419 |
Q |
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| T |
7622320 |
ttgaaatggctgttttcattcaccatctcattctcaactacaattgggaattgactgataataacgatcaagcttttgcatatccttttgttgatttt |
7622417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 7621998 - 7622173
Alignment:
| Q |
11 |
atcatcaatcttaatactactattatttatccttagcctcgagttgtcatat--gtagccacgccttcatgtgtcatgatttgatgttgtatctatacat |
108 |
Q |
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| T |
7621998 |
atcatcaatcttaatactactattatttatccttagcctcgagttgtcatatatgtagccacgccttcatgtgtcatgatttggtgttgtatctatacat |
7622097 |
T |
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| Q |
109 |
tcttataatgatgtttgggaaggatccatatttcatgcagtcaaaaccacatctagttttatgctttggatatgta |
184 |
Q |
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| T |
7622098 |
tcttataatgatgtttgggaaggatccatatttcatgcagtcaaaaccacatctagttttatgctttggatatgta |
7622173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 33101636 - 33101542
Alignment:
| Q |
276 |
tttggaggaggaccaagattatgcgcaggatcagaattagcaaagcttgaaatggctgttttcattcaccatctcatcctcaactacaattggga |
370 |
Q |
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| T |
33101636 |
tttggaggaggaccaaggctatgtgcaggattagaattagccaaacttgaaatggctgttttcattcaccatatcatcctcaaatacaactggga |
33101542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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