View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_low_14 (Length: 359)
Name: NF11525_low_14
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 35965727 - 35965391
Alignment:
| Q |
1 |
tgtggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttaggtgttaataatcaat |
100 |
Q |
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| T |
35965727 |
tgtggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttaggtgtttataatcaat |
35965628 |
T |
|
| Q |
101 |
tctaaatacaaaatcaattatactaataaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtgtgtttattt |
200 |
Q |
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| T |
35965627 |
tctaaatacaaaatcaattatactaacaaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtgtgtttattt |
35965528 |
T |
|
| Q |
201 |
tcagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtgaattgtttagttccatagactcataaacagtccaagttgttaaata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965527 |
tcagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtaaattgtttagttccatagactcataaacagtccaagttgttaaata |
35965428 |
T |
|
| Q |
301 |
tttggtcctctcccctattaaccgcgaatattcacca |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35965427 |
tttggtcctctcccctattaaccgcgaatattcacca |
35965391 |
T |
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