View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11525_low_18 (Length: 299)
Name: NF11525_low_18
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 11887169 - 11887445
Alignment:
| Q |
11 |
cacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11887169 |
cacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgc |
11887268 |
T |
|
| Q |
111 |
ttgttcctgtcattctactgcttcacaatctgtggtgcaaaaatatgtatgatataat---tactaaatcattagacaaatatgtatataataaattgaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11887269 |
ttgttcctgtcattctactgcttcacaatctgtggtgcaaaaatatgtatgatataattagtactaaatcattagacaaatatgtatataataaattgaa |
11887368 |
T |
|
| Q |
208 |
agacaaaatggaacaagagaaagtagcatagttggtacttaagaaagcaattatagtgtcagtggacttgtaattag |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11887369 |
agacaaaatggaacaagagaaagtagcatagttggtacttaagaaagcaattatagtgtcagtggacttgtaattag |
11887445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 11776582 - 11776681
Alignment:
| Q |
11 |
cacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgc |
110 |
Q |
| |
|
|||||| |||| ||||||||||||||| | |||| |||||||||||| |||||||||||| | || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11776582 |
cacagatcatgccccacaagatagtttttcaccaaacagctccagttatcgtagttgtctcttgttagtggttcaagaactattccactagctgcaatgc |
11776681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 11816590 - 11816676
Alignment:
| Q |
27 |
caagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgcttg |
113 |
Q |
| |
|
||||||||||||| |||| ||||||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11816590 |
caagatagtttctcaccaaacagctccaattatcgtagttgtcttttgttagtggttcaagaactattccacttgctgcaatgcttg |
11816676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 11841886 - 11841988
Alignment:
| Q |
11 |
cacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgc |
110 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| |||| |||||||||||| |||||||||||||| || |||||||||||||||||| || | |||| ||||| |
|
|
| T |
11841886 |
cacagatcatgcccctcaagatagtttctcaccaaacagctccagttatcgtagttgtcttttgttagtggttcaagaactattgcatttgctgaaatgc |
11841985 |
T |
|
| Q |
111 |
ttg |
113 |
Q |
| |
|
||| |
|
|
| T |
11841986 |
ttg |
11841988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 11740035 - 11739970
Alignment:
| Q |
29 |
agatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactatt |
94 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
11740035 |
agataatttctcaccagacagctccagtaatcatagttgtctttcgtcagtggttcaaaaactatt |
11739970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University