View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_low_19 (Length: 291)
Name: NF11525_low_19
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 46360010 - 46360243
Alignment:
| Q |
21 |
gcccatggatatatagggaagtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaa |
120 |
Q |
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| T |
46360010 |
gcccatggatatatagggaagtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaa |
46360109 |
T |
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| Q |
121 |
tattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaattttt |
220 |
Q |
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| T |
46360110 |
tattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaattttt |
46360209 |
T |
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| Q |
221 |
gatgtttttccttctaatagattgttatgttgaa |
254 |
Q |
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| T |
46360210 |
gatgtttttccttctaatagattgttatgttgaa |
46360243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 44461213 - 44461434
Alignment:
| Q |
33 |
atagggaagtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcatt |
132 |
Q |
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| T |
44461213 |
atagggaagtggcaataacgcagataaacgaaatggacagtatagcttccaatgtggcataccagcagctaggtgaaatgtatcttaatattagggcatt |
44461312 |
T |
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| Q |
133 |
attttgataggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttcct |
232 |
Q |
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| T |
44461313 |
attttgataggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagtcggatgaattttttatgtttttcct |
44461412 |
T |
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| Q |
233 |
tctaatagattgttatgttgaa |
254 |
Q |
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| T |
44461413 |
tctaatagattgttatgttgaa |
44461434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 44468746 - 44468967
Alignment:
| Q |
33 |
atagggaagtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcatt |
132 |
Q |
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| T |
44468746 |
atagggaagtggcaataacgcagataaacgaaatggacagtatagcttccaatgtggcataccagcagctaggtgaaatgtatcttaatattagggcatt |
44468845 |
T |
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| Q |
133 |
attttgataggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttcct |
232 |
Q |
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| T |
44468846 |
attttgataggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagtcggatgaattttttatgtttttcct |
44468945 |
T |
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| Q |
233 |
tctaatagattgttatgttgaa |
254 |
Q |
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|||||||||||||||||||||| |
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| T |
44468946 |
tctaatagattgttatgttgaa |
44468967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 41584259 - 41584333
Alignment:
| Q |
107 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
181 |
Q |
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|||||| |||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
41584259 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
41584333 |
T |
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