View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11525_low_2 (Length: 682)

Name: NF11525_low_2
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11525_low_2
NF11525_low_2
[»] chr3 (13 HSPs)
chr3 (20-655)||(36419556-36420174)
chr3 (454-553)||(24671188-24671287)
chr3 (279-369)||(34489706-34489796)
chr3 (279-369)||(34523170-34523260)
chr3 (454-553)||(4579140-4579239)
chr3 (291-374)||(34470059-34470142)
chr3 (279-365)||(24671464-24671550)
chr3 (279-365)||(4578877-4578963)
chr3 (183-230)||(7201736-7201783)
chr3 (186-228)||(25258089-25258131)
chr3 (186-228)||(37059002-37059044)
chr3 (373-421)||(27630489-27630537)
chr3 (307-363)||(27630564-27630620)
[»] chr7 (7 HSPs)
chr7 (454-553)||(16183800-16183899)
chr7 (464-553)||(8140131-8140220)
chr7 (324-375)||(5103008-5103059)
chr7 (279-365)||(16184076-16184162)
chr7 (186-228)||(16780783-16780825)
chr7 (186-228)||(35851984-35852026)
chr7 (488-552)||(8138628-8138692)
[»] chr4 (5 HSPs)
chr4 (454-553)||(10427329-10427428)
chr4 (279-365)||(10427066-10427152)
chr4 (176-227)||(3741716-3741767)
chr4 (190-230)||(40423338-40423378)
chr4 (189-228)||(43115614-43115653)
[»] chr1 (6 HSPs)
chr1 (454-553)||(46191280-46191379)
chr1 (484-648)||(4130164-4130334)
chr1 (279-365)||(46191017-46191103)
chr1 (278-365)||(4129899-4129986)
chr1 (178-228)||(8041143-8041193)
chr1 (176-228)||(768297-768349)
[»] scaffold0074 (2 HSPs)
scaffold0074 (454-553)||(27395-27494)
scaffold0074 (279-365)||(27664-27750)
[»] chr6 (4 HSPs)
chr6 (461-646)||(18967933-18968125)
chr6 (279-349)||(18967670-18967740)
chr6 (454-574)||(6174194-6174317)
chr6 (279-327)||(6174693-6174741)
[»] chr2 (4 HSPs)
chr2 (279-374)||(30397334-30397429)
chr2 (186-228)||(21488869-21488911)
chr2 (454-551)||(30397080-30397177)
chr2 (273-340)||(42117455-42117522)
[»] chr8 (4 HSPs)
chr8 (183-233)||(34273147-34273197)
chr8 (186-228)||(32729437-32729479)
chr8 (190-228)||(38924421-38924459)
chr8 (183-227)||(30370060-30370104)
[»] chr5 (1 HSPs)
chr5 (183-228)||(35943554-35943599)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 655
Target Start/End: Original strand, 36419556 - 36420174
Alignment:
Q  20 tttgcttgtaacataaatgctaaaatcagccccactaattgttatacagttatgagttttgggtcagtggagctacttctatatggactcaaagaagtta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    ||||    
T  36419556 tttgcttgtaacataaatgctaaaatcagccccactaattgttatacagttatgagttttgggtcagtagagctatttctatatggactcaa----gtta 36419651  T
Q  120 tgattcaagcctaagattaagaaattatcacttatgaaattgttcattcttaagagcattttaaaaatcggttgaaccgactttaaaaatgattgaaccg 219  Q
    |||| |||| ||||||||||||||||||||  ||||||||||||||||||||||||||                      |||||||| |||||||||||    
T  36419652 tgatccaagtctaagattaagaaattatcatctatgaaattgttcattcttaagagca----------------------ctttaaaagtgattgaaccg 36419729  T
Q  220 atcttaaaattactttattattaacaagacacatgcgcatggtgtatgtatgcaagacaaagttgcatatctcatgtaatgcaaagtggcaaagtggt-- 317  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||      
T  36419730 atcttaaaattactttattattaacaagacatatgcccatggtgcatgtatgcaagacaaaattgcatatctcatgtaatgtaaagtggtaaagtggtaa 36419829  T
Q  318 ------tagttgcatgtattgacaagttgtaagatgcacgatatacaagtgacatgttacacatggaagacaagtgacttgttgcatgtaaggggctgta 411  Q
          ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  36419830 agtggttagttgcatgtattgacaagttgtaagatgcacgagatacaagtgacatgtttcacatggaagacaagtgacttgttgtatgtaagggactgta 36419929  T
Q  412 gtttacctcttctacaaatagcttgttgagagtggnnnnnnn-tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttct 510  Q
    |||||||| ||||||||||||||||||||||||||        |||||||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  36419930 gtttaccttttctacaaatagcttgttgagagtggaaaaaaaatatagaaaggaaatatggtttatctcgtaaagtttctcctagtattagtattcttct 36420029  T
Q  511 gttgcaagagatagggtaatttgtctctcattgtatttagagatcttgtaatttctccaacttagcaaatgttttctacttttgcctcgttgtctttttc 610  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  36420030 attgcaagagatggggtaatttgtctctcattgtatttagagatcttgtaatttctccaacttagcaaatgttttctacttttgccccgtagtctttttc 36420129  T
Q  611 cgtatttgttgaaagatttccacgtaaatattatgtgtgttgttc 655  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  36420130 tgtatttgttgaaagatttccacgtaaatattatgtgtgttgttc 36420174  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 24671287 - 24671188
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    |||||| |||||||||||||| ||| || | |||||||||||| |||||||||| || || ||||||| ||||||||||||||||| |||||||||||||    
T  24671287 tatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagaga 24671188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 34489796 - 34489706
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgacatgtt 369  Q
    ||||||||| | |||||||| | |||||||||||||||  ||||||||| |||||||||||| ||||| || || ||||||||||||||||    
T  34489796 aagttgcatttttcatgtaaggaaaagtggcaaagtggacagttgcatgcattgacaagttgcaagatacatgagatacaagtgacatgtt 34489706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 34523260 - 34523170
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgacatgtt 369  Q
    ||||||||| | |||||||| |||||||||||||||||  ||||||||| |||||||||||| |||||||| |  |||||| |||||||||    
T  34523260 aagttgcatttttcatgtaaggcaaagtggcaaagtggacagttgcatgcattgacaagttgcaagatgcatgcgatacaaatgacatgtt 34523170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 4579140 - 4579239
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    |||||| |||||||||||||| ||| || | ||||||| |||  |||||||||| || || || |||| ||||||||||||||||| |||||||||||||    
T  4579140 tatagagaggaaatatagtttctcctgtgaggtttctcatagagttagtattctcctatttcacgagagagggtaatttgtctctccttgtatttagaga 4579239  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 34470142 - 34470059
Alignment:
Q  291 tcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgacatgttacaca 374  Q
    ||||| || |||||||||||||||||  |||||| || |||||||||||| |||||||| || |||| ||||||||||| ||||    
T  34470142 tcatgcaaagcaaagtggcaaagtggacagttgcgtgcattgacaagttgcaagatgcatgagataccagtgacatgttgcaca 34470059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 24671550 - 24671464
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    ||||||||  ||||||||||||||  |||||||||||| | |||||||| ||||||| |||| |||||||| || || |||||||||    
T  24671550 aagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgcaagatgcatgagatgcaagtgaca 24671464  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 4578877 - 4578963
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    ||||||||  ||||||||||||||  |||||||||||| | |||||||| ||||||| |||  |||||||| || || |||||||||    
T  4578877 aagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttacaagatgcatgagatgcaagtgaca 4578963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 7201783 - 7201736
Alignment:
Q  183 aaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaaatt 230  Q
    |||||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  7201783 aaaatcggttgaaccggcttaaaagatgattgaacctatcttaaaatt 7201736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 25258089 - 25258131
Alignment:
Q  186 atcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||    
T  25258089 atcggttgaaccgacttaaaaagtgattgaactgatcttaaaa 25258131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 37059002 - 37059044
Alignment:
Q  186 atcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  37059002 atcggttgaatcgacttaaaaaatgattgaatcgatcttaaaa 37059044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 27630537 - 27630489
Alignment:
Q  373 catggaagacaagtgacttgttgcatgtaaggggctgtagtttacctct 421  Q
    ||||||||||||||| |||||||||||||||   || ||||||||||||    
T  27630537 catggaagacaagtggcttgttgcatgtaagaaactatagtttacctct 27630489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 27630620 - 27630564
Alignment:
Q  307 ggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtga 363  Q
    ||||||||||  ||||| ||| |||||||||||| |||||||| || ||||||||||    
T  27630620 ggcaaagtggacagttgtatgcattgacaagttgcaagatgcatgagatacaagtga 27630564  T

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Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 16183899 - 16183800
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    |||||| |||||||||||||| ||| || | |||||||||||| |||||||||| || || ||||||| ||||||||||||||||| |||||||||||||    
T  16183899 tatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagaga 16183800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 8140220 - 8140131
Alignment:
Q  464 aaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    ||||||||||| | | || | || |||||||||| ||||||||| || || ||||||| ||||||||||||||||| ||||||| |||||    
T  8140220 aaatatagtttcttctgtgatgtgtctcctagtaatagtattctcctatttcaagagagagggtaatttgtctctccttgtattaagaga 8140131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 5103059 - 5103008
Alignment:
Q  324 catgtattgacaagttgtaagatgcacgatatacaagtgacatgttacacat 375  Q
    ||||||||||||||||| |||||||| || | ||||||||||||||||||||    
T  5103059 catgtattgacaagttggaagatgcatgagaaacaagtgacatgttacacat 5103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 16184162 - 16184076
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    ||||||||  ||| ||||||||||  |||||||||||  | |||||||| ||||||| |||| |||||||| || || |||||||||    
T  16184162 aagttgcacttcttatgtaatgcatggtggcaaagtgaatggttgcatgcattgacatgttgcaagatgcatgagatgcaagtgaca 16184076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 16780783 - 16780825
Alignment:
Q  186 atcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||||||| |||||| |||| ||||||||||||||||||||    
T  16780783 atcggttgaatcgacttaaaaagtgattgaaccgatcttaaaa 16780825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 35851984 - 35852026
Alignment:
Q  186 atcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  35851984 atcggttgaaccgacttagaaagtgattgaaccgatcttaaaa 35852026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 8138692 - 8138628
Alignment:
Q  488 tctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagag 552  Q
    |||||||||  ||||||||| ||  | ||||||| || |||||||||||||| ||||||||||||    
T  8138692 tctcctagtgatagtattctcctacttcaagagagagagtaatttgtctctccttgtatttagag 8138628  T

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Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 10427329 - 10427428
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    |||||| |||||||||||||| ||| || | |||||||||||| |||||||||| || || ||||||| ||||||||||||||||| |||||||||||||    
T  10427329 tatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagaga 10427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 10427066 - 10427152
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    ||||||||  ||||||||||||||  |||||||||||| | |||||||| ||||||| |||| |||||||| || || |||||||||    
T  10427066 aagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgcaagatgcatgagatgcaagtgaca 10427152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 3741767 - 3741716
Alignment:
Q  176 cattttaaaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaa 227  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||||||||||||    
T  3741767 catttttaaaatcggttgaaccaacttaaaaaatgattgcaccgatcttaaa 3741716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 40423338 - 40423378
Alignment:
Q  190 gttgaaccgactttaaaaatgattgaaccgatcttaaaatt 230  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  40423338 gttgaaccgacttaaaaagtgattgaaccgatcttaaaatt 40423378  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 43115653 - 43115614
Alignment:
Q  189 ggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  43115653 ggttgaaccgacttaaaaaattattgaaccgatcttaaaa 43115614  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 46191280 - 46191379
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    |||||| |||||||||||||| ||| || | |||||||||||| |||||||||| || || ||||||| ||||||||||||||||| || ||||||||||    
T  46191280 tatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttctatttagaga 46191379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 648
Target Start/End: Original strand, 4130164 - 4130334
Alignment:
Q  484 agtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga----tcttgtaatt-tctccaacttagcaa 578  Q
    ||||||||||||| |||||||| | || || ||||||| ||||||||||||||||| |||||||||||||    |||||||||| ||| | ||||||  |    
T  4130164 agtttctcctagtgttagtattgtcctatttcaagagagagggtaatttgtctctccttgtatttagagagaagtcttgtaattatcttccacttagtga 4130263  T
Q  579 atgttttctacttttgcctcgttgtctttttcc-gtatttgttgaaagatttccacgtaaatattatgtgt 648  Q
    | ||| |||||| ||||| ||| || |||| ||  ||||||||||  ||||||||||||||| || |||||    
T  4130264 aagttctctactcttgccccgtggttttttccctttatttgttgagggatttccacgtaaattttgtgtgt 4130334  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 46191017 - 46191103
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    ||||||||  ||||||||||||||  |||||||||||| | |||||||| ||||||| ||||||||||||| || || |||||||||    
T  46191017 aagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgtaagatgcatgagatgcaagtgaca 46191103  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 4129899 - 4129986
Alignment:
Q  278 aaagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    |||||||||  ||||||||||||||  |||||||||||| | |||||||| ||||||| |||| |||||||| || || |||||||||    
T  4129899 aaagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgcaagatgcatgagatgcaagtgaca 4129986  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 8041193 - 8041143
Alignment:
Q  178 ttttaaaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||| | ||||||||||| |||| |||| ||||||||||||||||||||    
T  8041193 ttttaagattcggttgaaccaacttaaaaattgattgaaccgatcttaaaa 8041143  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 768297 - 768349
Alignment:
Q  176 cattttaaaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||| ||||| | |||||||||||| |||| ||||||||| ||||||||||    
T  768297 catttttaaaattgattgaaccgacttaaaaagtgattgaactgatcttaaaa 768349  T

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Target: scaffold0074 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 27494 - 27395
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga 553  Q
    |||||| |||||||||||||| ||| || | |||||||||||| |||||||||  || || ||||||| | ||||||||||||||| |||||||||||||    
T  27494 tatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattcacctatttcaagagagatggtaatttgtctctccttgtatttagaga 27395  T

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Target: scaffold0074; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 27750 - 27664
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgaca 365  Q
    ||||||||  ||||||||||||||  |||||||||||| |  ||||||| ||||||| |||| |||||||| || || |||||||||    
T  27750 aagttgcacttctcatgtaatgcatggtggcaaagtggatgcttgcatgcattgacatgttgcaagatgcatgagatgcaagtgaca 27664  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 461 - 646
Target Start/End: Original strand, 18967933 - 18968125
Alignment:
Q  461 aggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttagaga----tct 556  Q
    |||||||||||||| ||  || | |||||||||||| |||||||||| || || || |||| ||| ||||||||||||| |||||||||||||    |||    
T  18967933 aggaaatatagtttctcttgtgaggtttctcctagtgttagtattctcctatttcatgagagaggctaatttgtctctccttgtatttagagagaagtct 18968032  T
Q  557 tgtaatt-tctccaacttagcaaatgttttctacttttgcctcgttgtctttt-tccgtatttgttgaaagatttccacgt-aaatattatgt 646  Q
    ||||||| ||| | ||||||  || |||||||||| ||||| ||| || ||||  || ||||||||||  | ||||||||| |||||||||||    
T  18968033 tgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattatgt 18968125  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 18967670 - 18967740
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgca 349  Q
    ||||||||  ||||||||||||||  |||||||||||| | |||||||| ||||||| |||| ||||||||    
T  18967670 aagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgcaagatgca 18967740  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 574
Target Start/End: Complemental strand, 6174317 - 6174194
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaa-tttgtctctcattgtatttagag 552  Q
    ||||||||||||||||||||| |||  ||| | |||| ||||| ||||||||  | | || ||||||| | ||||| |||| ||||  ||||||||||||    
T  6174317 tatagaaaggaaatatagtttctcctataaggattcttctagttttagtatttctttatttcaagagagaaggtaactttgcctctacttgtatttagag 6174218  T
Q  553 a--tcttgtaatttctccaactta 574  Q
    |  ||||||||||||||| |||||    
T  6174217 aggtcttgtaatttctcccactta 6174194  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 6174741 - 6174693
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatg 327  Q
    ||||||||| |||||||||||||||||||| |||  || ||||||||||    
T  6174741 aagttgcatttctcatgtaatgcaaagtggtaaaacggatagttgcatg 6174693  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 30397429 - 30397334
Alignment:
Q  279 aagttgcatatctcatgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttgtaagatgcacgatatacaagtgacatgttacaca 374  Q
    ||||||||| || ||||||||||| ||||||||| ||  | ||| ||| ||||||||||||| |||||||| || ||  |||||||||||| ||||    
T  30397429 aagttgcatttcgcatgtaatgcatagtggcaaaatgaatggttacatatattgacaagttgcaagatgcatgagatgtaagtgacatgttgcaca 30397334  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 21488911 - 21488869
Alignment:
Q  186 atcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  21488911 atcggttgaactgacttaaaaaatgattgaaccgatcttaaaa 21488869  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 551
Target Start/End: Complemental strand, 30397177 - 30397080
Alignment:
Q  454 tatagaaaggaaatatagtttttcccgtaaagtttctcctagtattagtattcttctgttgcaagagatagggtaatttgtctctcattgtatttaga 551  Q
    |||||| |||||||||||||| ||| || |  ||||||||||| ||| |||||| || || ||| | | ||||||||||||||||| |||||| ||||    
T  30397177 tatagagaggaaatatagtttctcctgtgagatttctcctagtgttaatattctcctatttcaacatagagggtaatttgtctctccttgtatataga 30397080  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 42117455 - 42117522
Alignment:
Q  273 aagacaaagttgcatatctca-tgtaatgcaaagtggcaaagtggttagttgcatgtattgacaagttg 340  Q
    |||||||| |||||| ||||| |||||||||| |||||||||||| |||||||||| ||||| ||||||    
T  42117455 aagacaaa-ttgcatttctcaatgtaatgcaaggtggcaaagtggatagttgcatgcattgataagttg 42117522  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 34273147 - 34273197
Alignment:
Q  183 aaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaaattact 233  Q
    |||||||||||||||||||| || | |||||||||||||||||||| ||||    
T  34273147 aaaatcggttgaaccgacttaaacagtgattgaaccgatcttaaaagtact 34273197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 32729479 - 32729437
Alignment:
Q  186 atcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  32729479 atcggttgaaccgacttaaaaaataattgaactgatcttaaaa 32729437  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 38924459 - 38924421
Alignment:
Q  190 gttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  38924459 gttgaaccgacttaaaaagtgattgaaccgatcttaaaa 38924421  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 30370060 - 30370104
Alignment:
Q  183 aaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaa 227  Q
    ||||||||||||||| |||| |||| |||||||||||||| ||||    
T  30370060 aaaatcggttgaaccaacttaaaaagtgattgaaccgatcataaa 30370104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 35943554 - 35943599
Alignment:
Q  183 aaaatcggttgaaccgactttaaaaatgattgaaccgatcttaaaa 228  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||    
T  35943554 aaaatcggttgaactgacttaaaaaataattgaaccgatcttaaaa 35943599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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