View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_low_20 (Length: 271)
Name: NF11525_low_20
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 43599441 - 43599566
Alignment:
| Q |
134 |
tcagacgaaagaaaaagtacaaacagtaagattttgtagtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
233 |
Q |
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| T |
43599441 |
tcagacgaaagaaaaagtacaaacagtaagattttgttgtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
43599540 |
T |
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| Q |
234 |
atgaaaaaatgtctgctctgtgctcc |
259 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
43599541 |
atgaaaaaatgtctgctccgtgctcc |
43599566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 43604933 - 43605058
Alignment:
| Q |
134 |
tcagacgaaagaaaaagtacaaacagtaagattttgtagtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
233 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604933 |
tcagacgaaagaaaaagtacaaacagtaagattttgttgtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
43605032 |
T |
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| Q |
234 |
atgaaaaaatgtctgctctgtgctcc |
259 |
Q |
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| T |
43605033 |
atgaaaaaatgtctgctccgtgctcc |
43605058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 43610425 - 43610550
Alignment:
| Q |
134 |
tcagacgaaagaaaaagtacaaacagtaagattttgtagtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
233 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43610425 |
tcagacgaaagaaaaagtacaaacagtaagattttgttgtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
43610524 |
T |
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| Q |
234 |
atgaaaaaatgtctgctctgtgctcc |
259 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
43610525 |
atgaaaaaatgtctgctccgtgctcc |
43610550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 43588760 - 43588873
Alignment:
| Q |
21 |
tgaagaccatatgcaataataccaaattgatctccagttgaaagggacagaacgatgtcatcggataaaggtcgtcggaaaattgagatactagccatgg |
120 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43588760 |
tgaagaccatatgcaagaataccaaattgatctccagttgaaagggacagaacgatgtcatcggataaaggtcgtcgggaaattgagatactggccatgg |
43588859 |
T |
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| Q |
121 |
tgggtagtggtggt |
134 |
Q |
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| T |
43588860 |
tgggtagtggtggt |
43588873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 55338945 - 55338828
Alignment:
| Q |
134 |
tcagacgaaagaaaaagtacaaacagtaagattttgtagtaccgccggtatataactaacaataagtcaatgccgaatataatacctccaattaaatagg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
55338945 |
tcagacgaaagaaaaagtacaaacagtaagattttgttgtaccgtctgtatataac----aataagtcaatgccgaatataatacttccaattaaatagg |
55338850 |
T |
|
| Q |
234 |
atgaaaaaatgtctgctctgtg |
255 |
Q |
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||||||||||||||| |||||| |
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| T |
55338849 |
atgaaaaaatgtctgttctgtg |
55338828 |
T |
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