View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11525_low_3 (Length: 641)
Name: NF11525_low_3
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Complemental strand, 906971 - 906363
Alignment:
| Q |
18 |
gttaagccgcggttggagaatactattagttacattaagggtgagttggatgagcttgagagagaggatttctttaggttgaagaagattcagggttata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906971 |
gttaagccgcggttggagaatactattagttacattaagggtgagttggatgagcttgagagagaggatttctttaggttgaagaagattcagggttata |
906872 |
T |
|
| Q |
118 |
agaggagggaaattgaaaggaagatggtgattgctagggaacaacaagctattgaaaagttacaactgcagcaaggggtttctttcgaaacctctcacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906871 |
agaggagggaaattgaaaggaagatggtgattgctagggaacaacaagctattgaaaagttacaactgcagcaaggggtttctttcgaaacctctcacaa |
906772 |
T |
|
| Q |
218 |
cttgttggctggtacaaccggtaaagacgaggatatcattttctaaatatgaatatagagagatatgtgctcttgctccttcttcgaggtagtggctggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
906771 |
cttgttggctggtacaaccggtaaagacgaggatatcattttctaaatatgaatatagagagatatgtgctcttgctccttcttcgtggtagtggctggc |
906672 |
T |
|
| Q |
318 |
tatgtcttggtgttgctgctggttcttttgcagggttagacattgttctgtatcatgaataaaagtgcttaatatgtgtttatttatttctttgttattt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906671 |
tatgtcttggtgttgctgctggttcttttgcagggttagacattgttctgtatcatgaataaaagtgcttaatatgtgtttatttatttctttgttattt |
906572 |
T |
|
| Q |
418 |
taaggacgtaaatttttatcatgttcagaggcattgagacaatcatcatttgaaattgtggttcttatctggtcttgtgaaagatttaagttattgtgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906571 |
taaggacgtaaatttttatcatgttcagaggcattgagacaatcatcatttgaaattgtggttcttatctggtcttgtgaaagatttaagttattgtgat |
906472 |
T |
|
| Q |
518 |
tagctatacttttcctttcagaatgtattaattatctatagaacatatggctgtagcatatgattcactggacatgttgaataacaaattaaaatgcagg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906471 |
tagctatacttttcctttcagaatgtattaattatctatagaacatatggctgtagcatatgattcactggacatgttgaataacaaattaaaatgcagg |
906372 |
T |
|
| Q |
618 |
gctttatcc |
626 |
Q |
| |
|
||||||||| |
|
|
| T |
906371 |
gctttatcc |
906363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University