View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11525_low_4 (Length: 581)

Name: NF11525_low_4
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11525_low_4
NF11525_low_4
[»] scaffold0015 (2 HSPs)
scaffold0015 (19-573)||(40361-40913)
scaffold0015 (469-573)||(32309-32413)
[»] chr1 (30 HSPs)
chr1 (19-564)||(24233408-24233919)
chr1 (490-564)||(24242846-24242920)
chr1 (491-551)||(23896139-23896199)
chr1 (133-187)||(23896521-23896575)
chr1 (137-187)||(24243241-24243291)
chr1 (133-187)||(24246879-24246933)
chr1 (495-551)||(24629213-24629269)
chr1 (495-554)||(24246496-24246555)
chr1 (207-277)||(24805342-24805412)
chr1 (209-263)||(45693180-45693234)
chr1 (126-175)||(24512674-24512723)
chr1 (490-571)||(24634787-24634868)
chr1 (501-554)||(25478864-25478917)
chr1 (491-571)||(24513045-24513125)
chr1 (501-571)||(25610948-25611018)
chr1 (129-182)||(24635180-24635233)
chr1 (131-181)||(24222354-24222404)
chr1 (493-555)||(24626770-24626832)
chr1 (207-277)||(24627055-24627125)
chr1 (133-187)||(24805447-24805501)
chr1 (129-187)||(25611365-25611423)
chr1 (207-272)||(23896421-23896486)
chr1 (211-263)||(25611292-25611344)
chr1 (501-571)||(45692869-45692942)
chr1 (129-187)||(25478220-25478278)
chr1 (501-551)||(51782798-51782848)
chr1 (496-549)||(24805076-24805129)
chr1 (49-105)||(24512594-24512650)
chr1 (500-552)||(51381456-51381508)
chr1 (500-552)||(51858604-51858656)
[»] chr7 (1 HSPs)
chr7 (19-571)||(1421151-1421705)
[»] chr5 (13 HSPs)
chr5 (489-554)||(3181704-3181769)
chr5 (133-180)||(3181351-3181398)
chr5 (501-552)||(11081812-11081863)
chr5 (501-552)||(23766863-23766914)
chr5 (501-552)||(23816711-23816762)
chr5 (502-551)||(20292995-20293044)
chr5 (501-552)||(23769647-23769698)
chr5 (501-552)||(23819495-23819546)
chr5 (502-551)||(20301443-20301492)
chr5 (502-551)||(20305856-20305905)
chr5 (502-551)||(20310260-20310309)
chr5 (501-549)||(1427697-1427745)
chr5 (501-549)||(23732166-23732214)
[»] chr4 (3 HSPs)
chr4 (491-571)||(11032899-11032979)
chr4 (130-174)||(11032514-11032558)
chr4 (508-552)||(55419788-55419832)
[»] chr3 (29 HSPs)
chr3 (501-552)||(2696733-2696784)
chr3 (501-552)||(4142135-4142186)
chr3 (501-552)||(4157945-4157996)
chr3 (502-552)||(1437996-1438045)
chr3 (502-552)||(2456249-2456299)
chr3 (501-552)||(1891065-1891116)
chr3 (501-552)||(3754599-3754650)
chr3 (502-552)||(771500-771550)
chr3 (502-551)||(13498224-13498273)
chr3 (502-552)||(2442039-2442089)
chr3 (502-552)||(7942485-7942535)
chr3 (501-551)||(9608346-9608396)
chr3 (503-552)||(2631358-2631407)
chr3 (504-565)||(23197014-23197075)
chr3 (504-544)||(2459277-2459317)
chr3 (504-552)||(23230983-23231031)
chr3 (501-544)||(803227-803270)
chr3 (501-552)||(1931155-1931206)
chr3 (501-552)||(1940580-1940631)
chr3 (501-552)||(7432055-7432106)
chr3 (502-552)||(956381-956431)
chr3 (501-551)||(968670-968720)
chr3 (502-552)||(7324432-7324482)
chr3 (504-558)||(7398174-7398228)
chr3 (502-552)||(37753346-37753396)
chr3 (502-544)||(43991960-43992002)
chr3 (504-549)||(997578-997623)
chr3 (504-549)||(1013968-1014013)
chr3 (512-552)||(2686313-2686353)
[»] chr2 (7 HSPs)
chr2 (502-552)||(36577366-36577416)
chr2 (494-552)||(7160755-7160813)
chr2 (505-552)||(7168691-7168738)
chr2 (502-552)||(7156193-7156243)
chr2 (502-544)||(7174382-7174424)
chr2 (511-552)||(6538843-6538884)
chr2 (210-274)||(11237395-11237459)
[»] chr6 (11 HSPs)
chr6 (210-275)||(176000-176065)
chr6 (506-551)||(9819831-9819876)
chr6 (506-551)||(9825517-9825562)
chr6 (503-552)||(24417487-24417536)
chr6 (207-276)||(1471212-1471281)
chr6 (207-276)||(7565040-7565109)
chr6 (506-551)||(9703888-9703933)
chr6 (512-552)||(1453841-1453881)
chr6 (512-552)||(1465533-1465573)
chr6 (504-552)||(19119065-19119113)
chr6 (504-552)||(19126359-19126407)
[»] scaffold0044 (1 HSPs)
scaffold0044 (501-552)||(89142-89193)


Alignment Details
Target: scaffold0015 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 40913 - 40361
Alignment:
Q  19 ctttgttttgtcattgatcaacgtctcgctgttctctataacccttgcattagaaaagtaaagaaaccaccttctttagatcttccaagagaagaaggtt 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40913 ctttgttttgtcattgatcatcgtctcgctgttctctataacccttgcattagaaaagtaaagaaactaccttctttagatcttccaagagaagaaggtt 40814  T
Q  119 caaatctatttgcatttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatggccgtaaatacaatgttgcttgcaaaactca 218  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  40813 caaatctatttgcatttggctatgatcctttcattgat--ttacaaggttgtttctattttttgttatggtcgtaaatacaatgttgcttgcaaaactca 40716  T
Q  219 agttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttctaagtttcgttgtgatcaacatggagtatttgtgagtcgcaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  40715 agttaaagttcatactttgggcaccaactcttggagaaggattgaagacttcccttctaagtttcgttgtgatcgacatggagtatttgtgagtggcaca 40616  T
Q  319 gttaattggtttatatattgtaattcaactcgtgacttatgtgtcattgtttctctacatttgcgaaaggaatcttaagaggaaatactgcatccagatt 418  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40615 gttaattggtagacatattgtaattcaactcgtgacttatgtgtcattgtttctctacatttgcgaaaggaatcttacgaggaaatactgcatccagatt 40516  T
Q  419 ctggaaatattaatatctcaactttggatatcttgagggatagcttgtgcatattttctcaaaaaagaaacgactcttttactgatgtttggcttatgaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40515 ctggaaatattaatatctcaactttggatatcttgagggattgcttgtgcatattttctcaaaaaagaaacgactcttttactgatgtttggcttatgaa 40416  T
Q  519 ggaatatggaaataaagactcttggattaaattgatttgtcttccttcctttgct 573  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  40415 ggaatatgaaaataaagactcttggattaaattgattcgtcttccttcctttgct 40361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 469 - 573
Target Start/End: Complemental strand, 32413 - 32309
Alignment:
Q  469 atattttctcaaaaaagaaacgactcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttccttcct 568  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32413 atattttctcaaaaaagaaacgactcttttattgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgattcgtcttccttcct 32314  T
Q  569 ttgct 573  Q
    |||||    
T  32313 ttgct 32309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 19 - 564
Target Start/End: Complemental strand, 24233919 - 24233408
Alignment:
Q  19 ctttgttttgtcattgatcaacgtctcgctgttctctataacccttgcattagaaaagtaaagaaaccaccttctttagatcttccaagagaagaaggtt 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  24233919 ctttgttttgtcatcgatcaacgcctcgctgttctctataacccttgcattagaaaagtaaagaaattaccctctttagatcttccaagagaagaaggtt 24233820  T
Q  119 caaatctatttgcatttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatggccgtaaatacaatgttgcttgcaaaactca 218  Q
    ||| ||||||||                   |||| |||||||||||||| ||||||||||||||||||| | || ||      ||||||||||||||||    
T  24233819 caactctatttg-------------------cattaataattacaaggttatttctgttttttgttatggtcatagat------ttgcttgcaaaactca 24233745  T
Q  219 agttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttctaagtttcgttgtgatcaacatggagtatttgtgagtcgcaca 318  Q
    ||||||||||||||| || || ||| ||||||||||||||||||| || |||||||||| |||||||| || || |||||||||| ||||| || |||||    
T  24233744 agttaaagttcatacattaggtaccgactcttggagaaggattaaggacttcccttctatgtttcgttttggtcgacatggagtagttgtgtgtggcaca 24233645  T
Q  319 gttaattggtttatatattgtaattcaactcgtgacttatgtgtcattgtttctctacatttgcgaaaggaatcttaagaggaaatactgcatccagatt 418  Q
    || |||||||| |  |||| ||| ||||   |||||||  |||||||||||||||| |||||| | |||||||||||  | |||||||    ||| ||||    
T  24233644 gtgaattggttgacttattataactcaa---gtgacttgggtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgatt 24233548  T
Q  419 ctggaaatattaatatctcaactttggatatcttgagggatagcttgtgcatattttctcaaaaaagaaacgactcttttactgatgtttggcttatgaa 518  Q
    ||||| || ||  | | || |||||||||||  |||||||  |||||||||||||||||| |||||||| ||| |||||||||||||||||||||         
T  24233547 ctggagatttttttttgtcgactttggatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttactgatgtttggctt----- 24233453  T
Q  519 ggaatatggaaataaagactcttggattaaattgatttgtcttcct 564  Q
     ||||| ||||||||||| |||||||||||||||||| ||||||||    
T  24233452 -gaatacggaaataaagaatcttggattaaattgattagtcttcct 24233408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 24242920 - 24242846
Alignment:
Q  490 gactcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttcct 564  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||||||| ||| ||||||||    
T  24242920 gactcttttactgatgtttggcttatgaagatatacggaaataaagagtcttggattaaattaattcgtcttcct 24242846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 23896199 - 23896139
Alignment:
Q  491 actcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  23896199 actcttttattgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaatt 23896139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 23896575 - 23896521
Alignment:
Q  133 tttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatg 187  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  23896575 tttggctatgatcctttcattcataattacaaggttgtttctgttttttgctatg 23896521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 24243291 - 24243241
Alignment:
Q  137 gctatgatcctttcattgataattacaaggttgtttctgttttttgttatg 187  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24243291 gctatgaccctttcattgataattacaaggttgtttctgttttttgttatg 24243241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 24246933 - 24246879
Alignment:
Q  133 tttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatg 187  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  24246933 tttggctatgatcctttcattgataattacaagattgtttctgttttttgctatg 24246879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 495 - 551
Target Start/End: Complemental strand, 24629269 - 24629213
Alignment:
Q  495 ttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  24629269 ttttacagatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 495 - 554
Target Start/End: Complemental strand, 24246555 - 24246496
Alignment:
Q  495 ttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgat 554  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  24246555 ttttactgatgtttggcttatgaaagaatacggaaataaagagtcttggatgaaattgat 24246496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 24805412 - 24805342
Alignment:
Q  207 ttgcaaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttcta 277  Q
    |||||||||| ||||||||||||| |||||||||||  | || |||||||||||| |||||||||||||||    
T  24805412 ttgcaaaactgaagttaaagttcacactttgggcactcattcatggagaaggattcaagatttcccttcta 24805342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 45693234 - 45693180
Alignment:
Q  209 gcaaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaa 263  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  45693234 gcaaaactcaagttaaagttcatactttgggcacagactcttggagtaggattaa 45693180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 24512674 - 24512723
Alignment:
Q  126 atttgcatttggctatgatcctttcattgataattacaaggttgtttctg 175  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  24512674 atttgcatttggctacgatcctttcattgataactacaaggttgtttctg 24512723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 490 - 571
Target Start/End: Complemental strand, 24634868 - 24634787
Alignment:
Q  490 gactcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttccttcctttg 571  Q
    ||||||| || |||||||||||||||||||||||| |||| |||||| |||| |||| ||||||| || ||||||| |||||    
T  24634868 gactcttctaatgatgtttggcttatgaaggaatacggaattaaagagtcttagattgaattgatctgccttccttactttg 24634787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 25478864 - 25478917
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgat 554  Q
    |||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  25478864 tgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattgat 25478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 571
Target Start/End: Original strand, 24513045 - 24513125
Alignment:
Q  491 actcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttccttcctttg 571  Q
    ||||||| | |||||||||||||||||| |||||||||| |||||| || ||||||||||||||   |||||||| |||||    
T  24513045 actctttcaatgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattgatccatcttccttactttg 24513125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 25611018 - 25610948
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttccttcctttg 571  Q
    |||||||||||| |||| |||||| ||||||||||| |||||| |||||||||||  |||||||| |||||    
T  25611018 tgatgtttggctaatgacggaatacggaaataaagaatcttgggttaaattgattcatcttccttactttg 25610948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 24635233 - 24635180
Alignment:
Q  129 tgcatttggctatgatcctttcattgataattacaaggttgtttctgttttttg 182  Q
    ||||||||||||  || ||||||||||||| |||||||||||||||||||||||    
T  24635233 tgcatttggctacaatactttcattgataactacaaggttgtttctgttttttg 24635180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 24222404 - 24222354
Alignment:
Q  131 catttggctatgatcctttcattgataattacaaggttgtttctgtttttt 181  Q
    ||||||| || |||| |||||| ||||||||||||||||||||||||||||    
T  24222404 catttggttacgatcgtttcatcgataattacaaggttgtttctgtttttt 24222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 24626832 - 24626770
Alignment:
Q  493 tcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatt 555  Q
    |||||||  |||||||||||||||||||||||  ||| |||||| |||||| |||||||||||    
T  24626832 tcttttatcgatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattgatt 24626770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 24627125 - 24627055
Alignment:
Q  207 ttgcaaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttcta 277  Q
    ||||||||||||||||||  || |||||||||||||  | || |||||||||| ||| |||||||||||||    
T  24627125 ttgcaaaactcaagttaacatttatactttgggcacacattcatggagaaggactaaggatttcccttcta 24627055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 24805501 - 24805447
Alignment:
Q  133 tttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatg 187  Q
    ||||||||||||||||| ||| |||||||||| ||| ||||||||||||| ||||    
T  24805501 tttggctatgatccttttattcataattacaaagttttttctgttttttgctatg 24805447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 25611423 - 25611365
Alignment:
Q  129 tgcatttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatg 187  Q
    |||||||||||| ||||||| | ||||||||||||| |||||  |||||||||||||||    
T  25611423 tgcatttggctacgatccttccgttgataattacaaagttgtggctgttttttgttatg 25611365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 23896486 - 23896421
Alignment:
Q  207 ttgcaaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttccc 272  Q
    ||||||||||||||| |||||||| | |||||||||  | || |||||||||||||| ||||||||    
T  23896486 ttgcaaaactcaagtgaaagttcacattttgggcacacattcatggagaaggattaaggatttccc 23896421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 25611344 - 25611292
Alignment:
Q  211 aaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaa 263  Q
    |||||||||||| |||||||||||||||||||| | | ||||| |||||||||    
T  25611344 aaaactcaagttcaagttcatactttgggcaccgagttttggaaaaggattaa 25611292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 45692942 - 45692869
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaata---aagactcttggattaaattgatttgtcttccttcctttg 571  Q
    |||||||||||||||||||||||| ||| |||   | || ||||| |||||||||||||||||| ||| |||||    
T  45692942 tgatgtttggcttatgaaggaatacggatataaggaggagtcttgtattaaattgatttgtctttcttactttg 45692869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 25478220 - 25478278
Alignment:
Q  129 tgcatttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatg 187  Q
    ||||||||| ||||||||||| ||  ||  |||||||| ||||||||||||||||||||    
T  25478220 tgcatttggttatgatccttttatccatcgttacaaggctgtttctgttttttgttatg 25478278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 551
Target Start/End: Original strand, 51782798 - 51782848
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    |||||||||| |||||||||||||||||||| || | ||||||| ||||||    
T  51782798 tgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 24805129 - 24805076
Alignment:
Q  496 tttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaa 549  Q
    |||| ||||||||||||| | |||||||  |||||| |||||||||||||||||    
T  24805129 tttaatgatgtttggcttttcaaggaatgcggaaatgaagactcttggattaaa 24805076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 24512594 - 24512650
Alignment:
Q  49 gttctctataacccttgcattagaaaagtaaagaaaccaccttctttagatcttcca 105  Q
    |||||||||||||||| |||||||||| |||||||   ||| ||||||||| |||||    
T  24512594 gttctctataacccttccattagaaaattaaagaagttaccctctttagatattcca 24512650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 552
Target Start/End: Complemental strand, 51381508 - 51381456
Alignment:
Q  500 ctgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||| ||||| ||||||| |||||||||||| |||| ||||||| |||||||    
T  51381508 ctgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattg 51381456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 51858604 - 51858656
Alignment:
Q  500 ctgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||||| | ||||||||||||||||||  ||| ||||||| |||||||    
T  51858604 ctgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattg 51858656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 1421705 - 1421151
Alignment:
Q  19 ctttgttttgtcattgatcaacgtctcgctgttctctataacccttgcattagaaaagtaaagaaaccaccttctttagatcttccaagagaagaaggtt 118  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| | | | ||||||||| ||| | ||||||    
T  1421705 ctttgtttcgccattaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccctttattgatcttccacgagtacaaggtt 1421606  T
Q  119 caaatctatttgcatttggctatgatcctttcattgataattacaaggttgtttctgttttttgttatggccgtaaatacaatgttgcttgcaaaactca 218  Q
    ||| | ||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||   | |  |||     |||| |||||||||    
T  1421605 caactgtatatgcttttggatatgatcctttcattgataattacaaggttgttgctgttttttggtatggttcttatcaca---gggcttacaaaactca 1421509  T
Q  219 agttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttctaagtttcgttgtgatcaacatggagtatttgtgagtcgcaca 318  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||  ||||||  || | ||||||| |||| || ||| ||||     
T  1421508 agttgaagttcatacttt-ggcaccaactcttggagaaggattaaggacttcccttctaatgttcgtttggaacgacatggaatattcgtaagtggcacg 1421410  T
Q  319 gttaattggtttatatattgtaattcaa------ctcgtgacttatgtgtcattgtttctctacatttgcgaaaggaatcttaagaggaaatactgcatc 412  Q
    ||||||||||| | ||||||| ||| ||       |  ||  ||  ||  |||||||||||| |||||| | |||||||||||  | || |||| ||| |    
T  1421409 gttaattggttgacatattgttatttaaacggttttaatgggttgcgttccattgtttctcttcatttggggaaggaatcttatcaagagataccgcaac 1421310  T
Q  413 cagattctggaaatattaatatctcaactttggatatcttgagggatagcttgtgcatattttctcaaaaaagaaacgactcttttactgatgtttggct 512  Q
    |  ||| ||||||| | ||||  | ||| |||| | |  |||||||| |||||||||| ||||||| | ||||  || |||||| |||||||||||||||    
T  1421309 ctcattatggaaatctgaataagttaaccttgggtgtgatgagggattgcttgtgcattttttctcgagaaagtcaccactcttctactgatgtttggct 1421210  T
Q  513 tatgaaggaatatggaaataaagactcttggattaaattgatttgtcttccttcctttg 571  Q
    |||||||||||| ||||||||||| ||||||||||||||||||  |||||||| |||||    
T  1421209 tatgaaggaatacggaaataaagagtcttggattaaattgattcatcttccttactttg 1421151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 554
Target Start/End: Original strand, 3181704 - 3181769
Alignment:
Q  489 cgactcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgat 554  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3181704 cgactcttttgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgat 3181769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 3181351 - 3181398
Alignment:
Q  133 tttggctatgatcctttcattgataattacaaggttgtttctgttttt 180  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3181351 tttggttatgatcctttcattgataattataaggttgtttctgttttt 3181398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 552
Target Start/End: Original strand, 11081812 - 11081863
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| |||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattg 11081863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 23766914 - 23766863
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 23816762 - 23816711
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23816711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 23769698 - 23769647
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| |||||||||||||||| |||||||  ||||||| |||||||    
T  23769698 tgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattg 23769647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 23819546 - 23819495
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| |||||||||||||||| |||||||  ||||||| |||||||    
T  23819546 tgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattg 23819495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||| ||||||||||||||| || |||||| ||||||| ||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||| ||| |||||||||||||||||| |||||| ||||||| ||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||| ||| |||||||||||||||||| |||||| ||||||| ||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 1427745 - 1427697
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaa 549  Q
    |||||||||| ||||||| || |||||||||| ||| ||||||||||||    
T  1427745 tgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaa 1427697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 23732166 - 23732214
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaa 549  Q
    |||||||||| |||||||||||||||| |||||||  ||||||| ||||    
T  23732166 tgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaa 23732214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 491 - 571
Target Start/End: Original strand, 11032899 - 11032979
Alignment:
Q  491 actcttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttccttcctttg 571  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||   |||||||| |||||    
T  11032899 actcttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattgatccatcttccttactttg 11032979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 11032514 - 11032558
Alignment:
Q  130 gcatttggctatgatcctttcattgataattacaaggttgtttct 174  Q
    |||||||||||||||||||| || ||||  |||||||||||||||    
T  11032514 gcatttggctatgatccttttatcgatacgtacaaggttgtttct 11032558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 552
Target Start/End: Original strand, 55419788 - 55419832
Alignment:
Q  508 tggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||||||  |||||||||||||| ||||||| |||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattg 55419832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 2696784 - 2696733
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 2696733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 4142186 - 4142135
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4142135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 4157996 - 4157945
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4157945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 1437996 - 1438045
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattg 1438045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 2456249 - 2456299
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattg 2456299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 1891116 - 1891065
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  1891116 tgatgtttggattatgaaggaacatggaaataaagactcttggactaaattg 1891065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 552
Target Start/End: Original strand, 3754599 - 3754650
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  3754599 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattg 3754650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 771550 - 771500
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattg 771500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 2442039 - 2442089
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 2442089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 7942485 - 7942535
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| |||||||||| ||||| |||||||| |||||||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattg 7942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 551
Target Start/End: Complemental strand, 9608396 - 9608346
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| ||||||    
T  9608396 tgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 2631358 - 2631407
Alignment:
Q  503 atgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||| |||||||||||||||||||| |||| ||||||| |||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattg 2631407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 504 - 565
Target Start/End: Original strand, 23197014 - 23197075
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgtcttcctt 565  Q
    ||||||||| |||||||||||||||||| |||| ||||||| ||||||| || || ||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattcctt 23197075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 544
Target Start/End: Original strand, 2459277 - 2459317
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttgga 544  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttgga 2459317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 552
Target Start/End: Complemental strand, 23231031 - 23230983
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattg 23230983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 544
Target Start/End: Complemental strand, 803270 - 803227
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttgga 544  Q
    |||||||||| ||||||| ||||||||||||||||| |||||||    
T  803270 tgatgtttgggttatgaaagaatatggaaataaagagtcttgga 803227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 1931206 - 1931155
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| |||||| |||| |||||||||||||||| |||| |||||||    
T  1931206 tgatgtttgggttatgatggaacatggaaataaagactcctggactaaattg 1931155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 1940631 - 1940580
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||| |||||||    
T  1940631 tgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattg 1940580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 7432106 - 7432055
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||||  |||||||||||||||||||||||| || |||| |||||||    
T  7432106 tgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattg 7432055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 956381 - 956431
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||  |||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattg 956431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 551
Target Start/End: Original strand, 968670 - 968720
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    |||||||||| ||||||||||| ||||||||||||| || |||| ||||||    
T  968670 tgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaatt 968720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 7324482 - 7324432
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattg 7324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 558
Target Start/End: Complemental strand, 7398228 - 7398174
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaattgatttgt 558  Q
    ||||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgttttgt 7398174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 37753396 - 37753346
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| ||||| ||||||||||||| ||||| ||||||| |||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattg 37753346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 544
Target Start/End: Original strand, 43991960 - 43992002
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttgga 544  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttgga 43992002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaa 549  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaa 549  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 2686353 - 2686313
Alignment:
Q  512 ttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||||||||||||| ||||| ||||||| |||||||    
T  2686353 ttatgaaggaatatggaaaaaaagagtcttggaataaattg 2686313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 36577366 - 36577416
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 36577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 7160813 - 7160755
Alignment:
Q  494 cttttactgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||| |||||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  7160813 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 7160755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 505 - 552
Target Start/End: Complemental strand, 7168738 - 7168691
Alignment:
Q  505 gtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattg 7168691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 7156243 - 7156193
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||||||||||||||| ||||||||| |||| ||||||  |||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattg 7156193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 544
Target Start/End: Complemental strand, 7174424 - 7174382
Alignment:
Q  502 gatgtttggcttatgaaggaatatggaaataaagactcttgga 544  Q
    ||||| |||||||||||||||||||||||| |||| |||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttgga 7174382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 552
Target Start/End: Original strand, 6538843 - 6538884
Alignment:
Q  511 cttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||||||| |||||||||||||| ||||||| |||||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattg 6538884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 11237395 - 11237459
Alignment:
Q  210 caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttccctt 274  Q
    |||||||||||| || || ||||||||||| ||||| | ||||||||||||| | ||||| ||||    
T  11237395 caaaactcaagtgaaggtccatactttgggtaccaatttttggagaaggattcatgatttacctt 11237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 176000 - 176065
Alignment:
Q  210 caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttc 275  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||  ||| ||||||||    
T  176000 caaaactcaagttaaggttcacactttaggcaccaactcttggagaaggattccagacttcccttc 176065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  506 tttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 9825562 - 9825517
Alignment:
Q  506 tttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||    
T  9825562 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 9825517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 24417536 - 24417487
Alignment:
Q  503 atgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattg 24417487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 1471281 - 1471212
Alignment:
Q  207 ttgcaaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttct 276  Q
    ||||||||||| |||||| ||||||||||| || | ||| | |||||||| |||| |||| |||||||||    
T  1471281 ttgcaaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttcccttct 1471212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 7565109 - 7565040
Alignment:
Q  207 ttgcaaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattaaagatttcccttct 276  Q
    |||||||||||||||||| ||||||||||| || | |||   |||||||||||||  ||| |||||||||    
T  7565109 ttgcaaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttct 7565040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  506 tttggcttatgaaggaatatggaaataaagactcttggattaaatt 551  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 1453881 - 1453841
Alignment:
Q  512 ttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  1453881 ttatgaagtattatggaaataaagactcttggaataaattg 1453841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 1465573 - 1465533
Alignment:
Q  512 ttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  1465573 ttatgaagtattatggaaataaagactcttggaataaattg 1465533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 19119065 - 19119113
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||| | |||||||||||||||||| |||| ||||||| |||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattg 19119113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 19126359 - 19126407
Alignment:
Q  504 tgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    ||||||| | |||||||||||||||||| |||| ||||||| |||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattg 19126407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 552
Target Start/End: Original strand, 89142 - 89193
Alignment:
Q  501 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 552  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattg 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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