View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11525_low_7 (Length: 470)
Name: NF11525_low_7
Description: NF11525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11525_low_7 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 15305056 - 15304697
Alignment:
| Q |
1 |
tattgagcactgcaaagcctagccgtga---tcgttggtgtggtcattgtaggaagtcaaatcacaatattgattcttgttttaaacttcatggaaaaga |
97 |
Q |
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| T |
15305056 |
tattgagcactgcaaagcctagccgtgaagatcgttggtgtggtcattgtaggaagtcaaatcacaatattgattcttgttttaaacttcatggaaaaga |
15304957 |
T |
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| Q |
98 |
gaaggtatttgggcggtgcaatggaggattcaaaggtgtatcatcaaagaggcgtactgattgaatggtaaaggactcagaggttgtgaaagatggcatg |
197 |
Q |
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| T |
15304956 |
gaaggtacttgggcggtgcaatggaggattcaaaggtgtatca---aagaggcgtactgattgaatggtaaaggactcagaggttgtgaaagatggcatg |
15304860 |
T |
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| Q |
198 |
gttttgccacaaggtgaaagggaattttcgaaaccacttagtacagaagagttggaacgtctacaggctctaatggattctcttaataagccatctagta |
297 |
Q |
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| T |
15304859 |
gttttgccacaaggtgaaagggaattttcgaaaccacttagtacagaagagttggaacgtctacaggctctaatggattctcttaataagccatctagta |
15304760 |
T |
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| Q |
298 |
gttattccggtaagaagtctagtattctatcctaattccggtaagaattctagtttcccatat |
360 |
Q |
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| T |
15304759 |
gttattccagtaagaagtctagtattctatcctaattccggtaagacttctagtttcctatat |
15304697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 15304652 - 15304563
Alignment:
| Q |
359 |
ataattttagaaaa-aacatatttcaatgtagttatatgtgttggtgtcggataccgacgcgtgtccaacactatgacacgctttatccg |
447 |
Q |
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| T |
15304652 |
ataattttagaaaacaacatatttcaatgtagttatatgtgtcggtgtcggataccgacgcgtgtccaacactatgacatgctttatccg |
15304563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 99903 - 99952
Alignment:
| Q |
359 |
ataattttagaaaa-aacatatttcaatgtagttatatgtgttggtgtcg |
407 |
Q |
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| T |
99903 |
ataattttagaaaataacataattcaatgtaattatatgtgttggtgtcg |
99952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 33419205 - 33419254
Alignment:
| Q |
380 |
ttcaatgtagttatatgtgttggtgtcggataccgacgcgtgtccaacac |
429 |
Q |
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| T |
33419205 |
ttcaatgtaattatatgtgttggtgtcagacaccaacgcgtgtccaacac |
33419254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 33405345 - 33405411
Alignment:
| Q |
381 |
tcaatgtagttatatgtgttggtgtcggataccgacgcgtgtccaacactatgacacgctttatccg |
447 |
Q |
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|||||||| | ||||||||||||| | || ||||||||||||||||||| | |||| |||| ||||| |
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| T |
33405345 |
tcaatgtaatcatatgtgttggtgccagacaccgacgcgtgtccaacaccaggacaggcttaatccg |
33405411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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