View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11526_high_1 (Length: 617)
Name: NF11526_high_1
Description: NF11526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11526_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 41257779 - 41258055
Alignment:
| Q |
1 |
ttttgtgttcaggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257779 |
ttttgtgttcaggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatg |
41257878 |
T |
|
| Q |
101 |
aagaacttggaaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaagaacgagaaggctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257879 |
aagaacttggaaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaagaacgagaaggctgc |
41257978 |
T |
|
| Q |
201 |
aactactaccaaatctccatccaaggctaccaaatctccaaagaaagcttagatttagtttctagggtttggtgttt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257979 |
aactactaccaaatctccatccaaggctaccaaatctccaaagaaagcttagatttagtttctagggtttggtgttt |
41258055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 272 - 517
Target Start/End: Original strand, 41258090 - 41258349
Alignment:
| Q |
272 |
gtgtttgtagcaatgcattttggatctcagtgtgtttctgatgtagtaggagtctgattcatgaatgaaaacatcttgtttttactca-tttttgttgct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41258090 |
gtgtttgtagcaatgcattttggatctcagtgtgtttctgatgtagtaggagtctgattcatgaatgaaaacatcttgtttttactcattttttgttgct |
41258189 |
T |
|
| Q |
371 |
taaacaattcatcttatttaatgctactatgattctatgccctcattaattattg-------------ttcgcaattactactggtatacatttcacatt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
41258190 |
taaacaattcatcttatttaatgctactatcattctatgccctcattaattattgttatgacctttatttcgcaattactactagtatacatttcacatt |
41258289 |
T |
|
| Q |
458 |
gattttgattctccaagcaaataatgagaaattgcggttcaattaattcaatttatgcca |
517 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41258290 |
gattttcattctccaagcgaataatgagaaattgcggttcaattaattcaatttatgcca |
41258349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 41244507 - 41244329
Alignment:
| Q |
9 |
tcaggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaactt |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
41244507 |
tcaggttcttgaattggctggaaatgcggcacgtgataacaagaagaataggataattccaaggcacgtgttgttggcagtgaggaatgatgaagagcta |
41244408 |
T |
|
| Q |
109 |
ggaaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaaga |
187 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
41244407 |
ggaaaattattagctggagttacaattgcacatggtggtgttcttccaaacatcaaccctgtgcttttgcctaagaaga |
41244329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 41251842 - 41251968
Alignment:
| Q |
113 |
aattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaagaacgagaaggctgcaactactaccaa |
212 |
Q |
| |
|
||||||| | ||| ||||| ||||| | ||| ||||||||||| ||||||||||| || | ||||| ||||||| || ||||||||| || | | ||| |
|
|
| T |
41251842 |
aattgtttggtggagttaccattgctcgtggtggtgttcttcctaacatcaaccctatgttgttgccaaagaagactgaaaaggctgcagctgcaagcaa |
41251941 |
T |
|
| Q |
213 |
atctccatccaaggctaccaaatctcc |
239 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
41251942 |
cactccatctaaggctaccaaatctcc |
41251968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 23875354 - 23875531
Alignment:
| Q |
11 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23875354 |
aggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagaacttgg |
23875453 |
T |
|
| Q |
111 |
aaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaagaa |
188 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23875454 |
taaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaacccaatcctattgcctaagaagaa |
23875531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 23448099 - 23447923
Alignment:
| Q |
11 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23448099 |
aggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagaacttgg |
23448000 |
T |
|
| Q |
111 |
aaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaaga |
187 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23447999 |
taaattgcttaatggtgttaccattgctcatggtggtgtttttcccaacatcaacccaatccttttgcctaagaaga |
23447923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 24298147 - 24298322
Alignment:
| Q |
13 |
gttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttggaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||||||||| ||||| |||||||| ||||| | |
|
|
| T |
24298147 |
gttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagagcttggta |
24298246 |
T |
|
| Q |
113 |
aattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaagaa |
188 |
Q |
| |
|
||||| | ||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24298247 |
aattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaacccaatccttttgcctaagaagaa |
24298322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 23423599 - 23423423
Alignment:
| Q |
11 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
23423599 |
aggttcttgagttggctggaaatgcagcacgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaatgatgaagatcttgg |
23423500 |
T |
|
| Q |
111 |
aaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaaga |
187 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
23423499 |
taaattgcttaatggtgttaccattgctcatggtggtgttcttccaaacattaaccctatccttttgcctaagaaga |
23423423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 26827906 - 26828082
Alignment:
| Q |
11 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttgg |
110 |
Q |
| |
|
|||||||||| ||||| ||||| || || ||||| ||||||||||| || ||||| || ||||| ||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
26827906 |
aggttcttgaattggcaggaaacgctgctcgtgataacaagaagaatagaatcattccaaggcatttgttgttggctgttaggaatgatgaagagcttgg |
26828005 |
T |
|
| Q |
111 |
aaaattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaaga |
187 |
Q |
| |
|
|||| || | ||||||||||||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
26828006 |
aaaactgcttgctggtgttacaattgctcatggtggtgttcttccgaacattaacccaattctgttgcctaagaaga |
26828082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 23446743 - 23446603
Alignment:
| Q |
13 |
gttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttggaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| || || || || ||||| ||||||| ||||| | ||| |||||||||||||| | |
|
|
| T |
23446743 |
gttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaattattccaaggcatttgttgtttgctgttatgaatgatgaagaacttggga |
23446644 |
T |
|
| Q |
113 |
aattgttagctggtgttacaattgcacatggaggtgttctt |
153 |
Q |
| |
|
|| | | | |||||||||||||| ||||| ||| ||||| |
|
|
| T |
23446643 |
aactacttgtaggtgttacaattgctcatggtggtattctt |
23446603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 35961690 - 35961862
Alignment:
| Q |
13 |
gttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttggaa |
112 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| ||||||||||| ||||| || || ||||| |||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
35961690 |
gttcttgaattggctggtaatgctgctcgtgataacaagaagaataggattattccaaggcatgtgttgttggctgtgaggaatgatgaagagcttggga |
35961789 |
T |
|
| Q |
113 |
aattgttagctggtgttacaattgcacatggaggtgttcttccaaacatcaacccaatccttttgcctaagaa |
185 |
Q |
| |
|
||||| | ||||||||||| ||||| ||||| ||||||||||| || || ||||| | ||||| |||||||| |
|
|
| T |
35961790 |
aattgcttgctggtgttaccattgctcatggtggtgttcttcctaatattaaccctgttcttttacctaagaa |
35961862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 12165104 - 12165198
Alignment:
| Q |
11 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
12165104 |
aggttcttgagttggctggaaatgcagctcgtgataacaagaagaatagaatcattccaaggcatgtgttgttggctgttaggaacgatgaagaa |
12165198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 46584524 - 46584630
Alignment:
| Q |
11 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttgg |
110 |
Q |
| |
|
|||||||||| |||||||| ||||| ||| | || |||||||||||||| || | |||||| ||||||| | ||||||||||||||||| ||| | || |
|
|
| T |
46584524 |
aggttcttgaattggctgggaatgctgcaagagataacaagaagaacagaattaaccctagacacgtgtgtcttgctgtgaggaacgatgatgaattagg |
46584623 |
T |
|
| Q |
111 |
aaaattg |
117 |
Q |
| |
|
||||||| |
|
|
| T |
46584624 |
aaaattg |
46584630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University