View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11526_low_2 (Length: 557)
Name: NF11526_low_2
Description: NF11526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11526_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 3064432 - 3064888
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3064432 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
3064531 |
T |
|
| Q |
101 |
tgcagaatcagtgagcagaggacaaaggaaagcaaagagggagtcatgtctagattgtagaatcaatatgatccatatgatttttatagtaaataaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3064532 |
tgcagaatcagtgagcagaggacaaaggaaagcaaagagggagtcatgtctagattgtagaatcaatatgatccatatgatttttatagtaaataaatat |
3064631 |
T |
|
| Q |
201 |
ctcttgtttcaatcaaaattaaagcactgagccactagtcttccaatttggtccatatgatttatagatannnnnnngtgtccatcaaaattaaagccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3064632 |
ctcttgtttcaatcaaaattaaagcactgagccactagtcttccaatttggtccatatgatttatagatatttttttgtgtccatcaaaattaaagccat |
3064731 |
T |
|
| Q |
301 |
tagtccttatagtcaactcatactaaatcaacaaagaagttggcttaactttggagataacaaacgtatgaaaactttccctttctgatagnnnnnnnnn |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3064732 |
tagtccttatagtcaactcatactaaatcaacaaagaagttggcttaactttggagataacaaacgtatgaaaactttccctttttgatagaaaattaaa |
3064831 |
T |
|
| Q |
401 |
nnnnnnntacatttcaattttgaccatggacttctgtaaaatgggctttcaggacag |
457 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3064832 |
ataaaaatacattacaattttgaccatggacttctgtaaaatggactttcaggacag |
3064888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3034006 - 3033875
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||| || |||| |
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| T |
3034006 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
3033907 |
T |
|
| Q |
101 |
tgcagaatcagtgagcagaggacaaaggaaag |
132 |
Q |
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|| |||||||| ||| | |||| ||||||||| |
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| T |
3033906 |
tgaagaatcagcgagtataggagaaaggaaag |
3033875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3042046 - 3041936
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
100 |
Q |
| |
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||||||||||||||| ||||||| |||| | ||||| | ||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||| |
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| T |
3042046 |
accagaaggtgaaagtaaccatgtagagttgctggtgtcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgatggat |
3041947 |
T |
|
| Q |
101 |
tgcagaatcag |
111 |
Q |
| |
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|| |||||||| |
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|
| T |
3041946 |
tgaagaatcag |
3041936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3066469 - 3066555
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctac |
87 |
Q |
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|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
3066469 |
accagaaggtgaaaacaaccatgaagaggtgttggtttgtgcagtaaaagaatcaccaatggctatagtacttttggtttgagctac |
3066555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3072127 - 3072246
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || | || | |||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
3072127 |
accagaaggtgaaagcaaccatggagaggtgttggtttctgaaatatgaaaatcaccagctgctatggtacttttggtttgagctacaacactgatggat |
3072226 |
T |
|
| Q |
101 |
tgcagaatcagtgagcagag |
120 |
Q |
| |
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|| |||||||||||| |||| |
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| T |
3072227 |
tgaagaatcagtgagaagag |
3072246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 3054868 - 3054755
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||| | || |||| ||||||||||||||||||||| |||| || ||||||||||||||| |||| ||||||| |
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| T |
3054868 |
accagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaacatggatggat |
3054769 |
T |
|
| Q |
101 |
tgcagaatcagtga |
114 |
Q |
| |
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|| ||||||||||| |
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|
| T |
3054768 |
tgaagaatcagtga |
3054755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3068456 - 3068516
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatg |
61 |
Q |
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|||||||||||||||||||||||||||| | | ||| | |||||||||||||||||||||| |
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| T |
3068456 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
3068516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 522 - 557
Target Start/End: Original strand, 3064952 - 3064987
Alignment:
| Q |
522 |
gtaggttacagacaagaatatttatctaatttagta |
557 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3064952 |
gtaggttacagacaagaatatttatctaatttagta |
3064987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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