View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11526_low_3 (Length: 319)
Name: NF11526_low_3
Description: NF11526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11526_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 50094584 - 50094298
Alignment:
| Q |
17 |
ttcttcacgtcttcatctgcatcttttgatttcttcttagaagtagaagcagaagccttagaagttagatgacagatccttcttaggttcctttttggca |
116 |
Q |
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| T |
50094584 |
ttcttcacgtcttcatctgcatcttttgatttcttcttagaagtagaagcagaagccttagaagttagaagacagatccttcttaggttcctttttggca |
50094485 |
T |
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| Q |
117 |
ggtttctcataattgaccaccattaaagtgtcaggaataccaaagaattaaagagtaaaggcaaggcatcgcaagataataaaggaaaataaaacaaatc |
216 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50094484 |
ggtttctcataattgaccaccattgaggtgtcaggaataccaaagaattaaagagtaaaggcaaggcatcgcaagataataaaggaaaataaaacaaatc |
50094385 |
T |
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| Q |
217 |
catttcctcccaagagggcaggctcacttacaccagtttgtgtaagacttttagaa---ggttcatatttatttggtttacttgtgt |
300 |
Q |
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| T |
50094384 |
catttcctcccaagagggcaggctcacttataccagtttgtgtaagacttttagaaggtggttcatatttatttggtttacctgtgt |
50094298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 35497925 - 35498120
Alignment:
| Q |
26 |
tcttcatctgcatcttttgatttcttcttagaagtagaagcagaagccttagaag-----ttagatgacagatccttcttaggttcctttttggcaggtt |
120 |
Q |
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| T |
35497925 |
tcttcatctgcatcttttgatttcttcttagaagtagaagtagaagtagaagcagatgccttagaagacagatccttctttggttcctttttggcaggta |
35498024 |
T |
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| Q |
121 |
tctcataattgaccaccattaaagtgtcaggaataccaaagaattaaagagtaaaggcaaggcatcgcaagataataaaggaaaataaaacaaatc |
216 |
Q |
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| T |
35498025 |
tctgaaaattggccatcattaaggtgtcaggaataccaaagatgtaaagagtagaggtgaggcatcacaagataataaaggaacataaaacaaatc |
35498120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 7073651 - 7073617
Alignment:
| Q |
29 |
tcatctgcatcttttgatttcttcttagaagtaga |
63 |
Q |
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| T |
7073651 |
tcatcagcatcttttgatttcttcttagaagtaga |
7073617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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