View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11526_low_5 (Length: 273)
Name: NF11526_low_5
Description: NF11526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11526_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 38052267 - 38052512
Alignment:
| Q |
18 |
atttcatcatatatgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagat |
117 |
Q |
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| T |
38052267 |
atttcatcatatatgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacactgtgtaccaccacaaagaagat |
38052366 |
T |
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| Q |
118 |
tccctcttgaaataggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccacc |
217 |
Q |
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| T |
38052367 |
tccctcttgaaataggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccacc |
38052466 |
T |
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| Q |
218 |
ttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
263 |
Q |
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| T |
38052467 |
ttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
38052512 |
T |
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Back To:
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 262
Target Start/End: Original strand, 39679769 - 39679965
Alignment:
| Q |
66 |
ggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacag |
165 |
Q |
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| T |
39679769 |
ggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggggaatttctcctccctggtggcccacaggatcag |
39679868 |
T |
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| Q |
166 |
aacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgt |
262 |
Q |
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| T |
39679869 |
aaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgt |
39679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 41239896 - 41239942
Alignment:
| Q |
217 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
263 |
Q |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtg |
41239942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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