View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11526_low_6 (Length: 256)

Name: NF11526_low_6
Description: NF11526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11526_low_6
NF11526_low_6
[»] chr6 (4 HSPs)
chr6 (41-229)||(228980-229171)
chr6 (1-196)||(237770-237967)
chr6 (119-205)||(24098388-24098474)
chr6 (136-205)||(32243325-32243394)
[»] chr4 (1 HSPs)
chr4 (103-205)||(50174530-50174634)
[»] chr5 (2 HSPs)
chr5 (112-205)||(13557286-13557379)
chr5 (112-205)||(13510400-13510493)
[»] chr1 (2 HSPs)
chr1 (119-203)||(43317289-43317373)
chr1 (157-205)||(33766892-33766940)
[»] chr2 (2 HSPs)
chr2 (121-205)||(42141796-42141880)
chr2 (117-145)||(16450045-16450073)
[»] chr8 (3 HSPs)
chr8 (112-203)||(27116721-27116812)
chr8 (119-205)||(12511081-12511167)
chr8 (119-203)||(9203595-9203677)
[»] chr7 (3 HSPs)
chr7 (112-205)||(22188628-22188719)
chr7 (112-197)||(2344805-2344890)
chr7 (119-200)||(5104833-5104914)
[»] chr3 (1 HSPs)
chr3 (119-199)||(4561794-4561874)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 228980 - 229171
Alignment:
Q  41 ctctcatactctaa--ctctaacaacaatcttcctcccatactcttatttttaatgctccctcggtcccaaattatgatattttgatcatttcatataaa 138  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||    
T  228980 ctctcatactctaagtctctaacaacaatcttcctcccatactcttatttttaatgctccctcggtcctaaattatgatgttttgatcatttcatacaaa 229079  T
Q  139 ttaagaagtataattaacgtcgtatgataaagagaaattacaagtcattt-taaaaaattatccttcaattgtcacaacatttctttaatat 229  Q
    ||||||| | ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  229080 ttaagaactgtaattaatgtcgtatgaaaaagagaaattacaagtcatttataaaaaattatccttcaattgtcacaacatttctttaatat 229171  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 237967 - 237770
Alignment:
Q  1 catatacccttatttgtaatgcaaaggaagagagggtcaactctcatactctaa--ctctaacaacaatcttcctcccatactcttatttttaatgctcc 98  Q
    |||||||| ||||||||||  ||||| |||||||||||||||||||||||||||  ||||||| |||||||| ||| |||||||||| |||||||||| |    
T  237967 catataccattatttgtaacacaaagtaagagagggtcaactctcatactctaagtctctaacgacaatctttctctcatactcttaattttaatgcttc 237868  T
Q  99 ctcggtcccaaattatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaat 196  Q
    |||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||   |||||||||||| ||||| ||||| |||||    
T  237867 ctcgatcccaaattatgatgttttgatcattgcatataaactaagaagtataattaatgtcgtatccgaaagagaaattataagtcgttttagaaaat 237770  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 24098474 - 24098388
Alignment:
Q  119 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||||||||||||| || ||||||||| | ||||||| || || ||| ||| ||||||||||| | |||||| ||||||||| ||||    
T  24098474 ttttgatcatttcacatcaattaagaaatgtaattaatgttgtgtgagaaaaagaaattacaaataattttacaaaattatctttca 24098388  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 32243394 - 32243325
Alignment:
Q  136 aaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    ||||||| || | ||||||| || |||||| |||||||||||| || | |||||| ||||||||||||||    
T  32243394 aaattaaaaaatgtaattaatgttgtatgaaaaagagaaattataaataattttacaaaattatccttca 32243325  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 50174634 - 50174530
Alignment:
Q  103 gtcccaaattat--gatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatc 200  Q
    ||||||||||||  || ||||||||||||||| | |||||||||||| ||||||| || | |||  |||||||||||| ||||||||||| |||||||||    
T  50174634 gtcccaaattatacgacattttgatcatttcacacaaattaagaagtgtaattaatgttgcatgggaaagagaaattataagtcattttacaaaattatc 50174535  T
Q  201 cttca 205  Q
    |||||    
T  50174534 cttca 50174530  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 13557286 - 13557379
Alignment:
Q  112 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||||||||||| |||||||| | |||||||||||| |||||||  | |||||| || | ||||||| | ||||||||| ||||||||||||||    
T  13557286 tatgatattttgttcatttcacacaaattaagaagtgtaattaatattgtatgagaacgtgaaattataggtcattttacaaaattatccttca 13557379  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 13510400 - 13510493
Alignment:
Q  112 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||||||||||| |||||||| | |||||||||| | |||||||  | |||||  || | ||||||| | ||||||||| ||||||||||||||    
T  13510400 tatgatattttgttcatttcacacaaattaagaaatgtaattaatattgtatgggaacgtgaaattataggtcattttacaaaattatccttca 13510493  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 43317373 - 43317289
Alignment:
Q  119 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatcctt 203  Q
    ||||||||||||||||||||||||||||| ||| ||| || ||| || ||| ||| |||| |||| |||||| ||||||||||||    
T  43317373 ttttgatcatttcatataaattaagaagtgtaaataatgttgtaggaaaaacagagattataagtaattttacaaaattatcctt 43317289  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 33766892 - 33766940
Alignment:
Q  157 gtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||| |||| ||||| |||||| ||||||||||| ||||||||||||||    
T  33766892 gtcgcatgaaaaagaaaaattataagtcattttataaaattatccttca 33766940  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 42141796 - 42141880
Alignment:
Q  121 ttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||||||||| | | |||||||||||| |||||||  | |||||  ||||| |||||| ||||||||||| ||||||||||||||    
T  42141796 ttgatcattttacacaaattaagaagtgtaattaatattgtatggaaaagataaattataagtcattttacaaaattatccttca 42141880  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 16450073 - 16450045
Alignment:
Q  117 tattttgatcatttcatataaattaagaa 145  Q
    |||||||||||||||||||||||||||||    
T  16450073 tattttgatcatttcatataaattaagaa 16450045  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 27116812 - 27116721
Alignment:
Q  112 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatcctt 203  Q
    |||||||||| |||||||||| | |||||||||| | ||||||| || |||||  ||||| |||||| |||| |||| | ||||||||||||    
T  27116812 tatgatatttcgatcatttcacacaaattaagaaatgtaattaatgttgtatggaaaagataaattataagtaatttaacaaaattatcctt 27116721  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 12511081 - 12511167
Alignment:
Q  119 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||| ||||||||| |||| |||||||||  |||||| ||   |||  ||||||| |||| ||||||||||| ||||||||||||||    
T  12511081 ttttaatcatttcacataacttaagaagtgcaattaatgttaaatggaaaagagatattataagtcattttacaaaattatccttca 12511167  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 9203677 - 9203595
Alignment:
Q  119 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatcctt 203  Q
    ||||| |||||||| |||||||||||| ||||||  | || | |||| ||||||| |||| |||| |||||| ||||||||||||    
T  9203677 ttttggtcatttcacataaattaagaaatataat--atgttgcatgagaaagagagattataagtaattttacaaaattatcctt 9203595  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 22188719 - 22188628
Alignment:
Q  112 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 205  Q
    |||| |||||||||||||||||| |||| ||||| | |||||||  | ||| || |  ||||||||| ||||||||||| ||||||||||||||    
T  22188719 tatggtattttgatcatttcatacaaatcaagaaatctaattaatattgtacgaga--gagaaattataagtcattttataaaattatccttca 22188628  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 2344805 - 2344890
Alignment:
Q  112 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaatt 197  Q
    |||||| |||||||||||| | | |||||||||||| ||| ||| || |||||| |||||||||||| ||||  ||||| ||||||    
T  2344805 tatgatgttttgatcattttacacaaattaagaagtgtaaataatgttgtatgaaaaagagaaattataagtagttttacaaaatt 2344890  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 5104833 - 5104914
Alignment:
Q  119 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatc 200  Q
    |||||||| ||||| | ||||||  || ||||| ||| || |||||| ||||| |||||| ||||||||||| |||||||||    
T  5104833 ttttgatcttttcacacaaattagaaaatataactaatgttgtatgagaaagataaattataagtcattttacaaaattatc 5104914  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 4561874 - 4561794
Alignment:
Q  119 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattat 199  Q
    ||||| |||||||||||||| |||||| | ||||||| || |||||  |||||||||||| |||| | |||| ||||||||    
T  4561874 ttttggtcatttcatataaaataagaaatgtaattaatgttgtatggaaaagagaaattataagtaaatttacaaaattat 4561794  T

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