View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11526_low_9 (Length: 240)
Name: NF11526_low_9
Description: NF11526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11526_low_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 41257547 - 41257768
Alignment:
| Q |
19 |
gaaaggtggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatac |
118 |
Q |
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| T |
41257547 |
gaaaggtggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcgttacttgaagaaaggaagatac |
41257646 |
T |
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| Q |
119 |
gctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggtgaatttcaatttacattttccctttttcttaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41257647 |
gctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggtgaatttcaatttacattttccctttttctcaa |
41257746 |
T |
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| Q |
219 |
tttcaattttgaatctgaaagc |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
41257747 |
tttcaattttgaatctgaaagc |
41257768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 41244748 - 41244583
Alignment:
| Q |
29 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
128 |
Q |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244748 |
ccaaggaagaagtctgtgaccagatccatcagagctggtcttcaatttccagttggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
41244649 |
T |
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| Q |
129 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggtgaatttca |
194 |
Q |
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| T |
41244648 |
ttggtactggtgctcctgtttacctcgccgctgttcttgaatatcttgctgctgaggtgaatttca |
41244583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 34614943 - 34615019
Alignment:
| Q |
110 |
ggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
186 |
Q |
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|||| ||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
34614943 |
ggaaaatacgctgaacgtgttggtgctggtgctcctgtttacctagctgctgttcttgaatatctcgctgctgaggt |
34615019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 34622430 - 34622506
Alignment:
| Q |
110 |
ggaagatacgctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
186 |
Q |
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|||| ||||||| | ||||||||| ||||||||||||||||| | || ||||||||||||||||| || |||||||| |
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| T |
34622430 |
ggaaaatacgctgaacgtgttggtgctggtgctcctgtttacctcgccgctgttcttgaatatctcgccgctgaggt |
34622506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 23423753 - 23423596
Alignment:
| Q |
29 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
128 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
23423753 |
ccaaggaagaagtcggtgacaagatccatcagagctggtcttcaatttccggttggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtg |
23423654 |
T |
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| Q |
129 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
186 |
Q |
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| || || |||||||| || ||| |||| || |||||||||||||| ||||||||||| |
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| T |
23423653 |
taggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggt |
23423596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 23875197 - 23875357
Alignment:
| Q |
26 |
ggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagc |
125 |
Q |
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||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |
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| T |
23875197 |
ggtccaaggaagaagtcggtgacaagatcaatcagagccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagc |
23875296 |
T |
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| Q |
126 |
gtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
186 |
Q |
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|||| || || |||||||| || ||| |||| || |||||||||||||| ||||||||||| |
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| T |
23875297 |
gtgtaggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggt |
23875357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 24297991 - 24298145
Alignment:
| Q |
29 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
128 |
Q |
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|||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
24297991 |
ccaaggaagaagtcggtgacaagatcaatcagagccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtg |
24298090 |
T |
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| Q |
129 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctga |
183 |
Q |
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| || || |||||||| || ||| |||| || ||||||||||||||||||||||| |
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| T |
24298091 |
tcggaacaggtgctccggtatacctagcagcagttcttgaatatcttgctgctga |
24298145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 23448253 - 23448096
Alignment:
| Q |
29 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
128 |
Q |
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|||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
23448253 |
ccaaggaagaagtcggtgacaagatcaatcagagccggtcttcaatttccagtgggaagaatcggtagatacttgaagaaaggaagatacgctcagcgtg |
23448154 |
T |
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| Q |
129 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
186 |
Q |
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| || || |||||||| || ||| |||| || |||||||||||||| ||||||||||| |
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| T |
23448153 |
taggcacaggtgctccagtatacctagcagcagttcttgaatatctcgctgctgaggt |
23448096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 26827749 - 26827909
Alignment:
| Q |
26 |
ggtccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagc |
125 |
Q |
| |
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||||||||||||||||| ||||||||||||| |||||| || || ||||| ||||||||||||||||| || ||| |||||||||| |||| ||||||| |
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| T |
26827749 |
ggtccaaggaagaagtcggtgacaagatccatcagagccggactccaattcccagtcggaagaatcggccgttacctgaagaaaggtcgatatgctcagc |
26827848 |
T |
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| Q |
126 |
gtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctgaggt |
186 |
Q |
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|||| || || |||||||| |||||| ||||||| ||||||||||| || ||||||||||| |
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| T |
26827849 |
gtgtcggcaccggtgctccggtttacctagctgcagttcttgaatacctcgctgctgaggt |
26827909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 23446809 - 23446745
Alignment:
| Q |
119 |
gctcagcgtgttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctga |
183 |
Q |
| |
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||||||||||| || || |||||||| || ||| | || || ||||||||||||||||||||||| |
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| T |
23446809 |
gctcagcgtgtcggaaccggtgctccagtatacctggcagcagttcttgaatatcttgctgctga |
23446745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 35961534 - 35961688
Alignment:
| Q |
29 |
ccaaggaagaagtcagtgacaagatccaccagagctggtcttcaatttccagtcggaagaatcggtcggtacttgaagaaaggaagatacgctcagcgtg |
128 |
Q |
| |
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|||||||||||||| || |||||||| | |||||| || |||||||| ||||| ||||||||||| || |||||||||||||| |||| ||||| |||| |
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| T |
35961534 |
ccaaggaagaagtcggtaacaagatcaatcagagccggacttcaattcccagtgggaagaatcggccgttacttgaagaaaggtcgatatgctcaacgtg |
35961633 |
T |
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| Q |
129 |
ttggtactggtgctcctgtttacttagctgctgttcttgaatatcttgctgctga |
183 |
Q |
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| || || |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35961634 |
tcggcaccggtgctcctgtttacttagccgctgttcttgaatatcttgctgctga |
35961688 |
T |
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