View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11527_high_10 (Length: 510)

Name: NF11527_high_10
Description: NF11527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11527_high_10
NF11527_high_10
[»] chr2 (1 HSPs)
chr2 (108-467)||(8057918-8058288)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 108 - 467
Target Start/End: Original strand, 8057918 - 8058288
Alignment:
Q  108 aacgttagaaattagaataaataaatcatgtatttttcataaagcatcgttgcaattaactttgatgtttttgcatatttcaaaaatcaactcggtataa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8057918 aacgttagaaattagaataaataaatcatgtatttttcataaagcatcgttgcaattaactttgatgtttttgcatatttcaaaaatcaactcggtataa 8058017  T
Q  208 aaccaaattgtttacaagggtttcgtaactacctttcaaatgtgtgaattcaagtgtctacgccagtgtgatgagtggccgtagaagccaggattaatca 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8058018 aaccaacttgtttacaagggtttcgtaactacctttcaaatgtgtgaattcaagtgtctacgccagtgtgatgagtggccgtagaagccaggattaatca 8058117  T
Q  308 tgatctaggcaatttttgaaacctannnnnnntttctttgaatcaattgttatcattattattagaggaga--------------tagatccatggttat 393  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||              ||||| |||||||||    
T  8058118 tgatctaggcaatttttgaaacctagggggggtttctttgaatcaattgttatcattattattagaggagatagccccatcaagctagattcatggttat 8058217  T
Q  394 gaaaaggaaatccttcacgtacgttttcggtcacatcggcatatctttagttcttacttcggtttaggttagat 467  Q
    ||||||||||||||||| ||||   ||| ||||  ||||||||||||| ||||||||||| |||||||||||||    
T  8058218 gaaaaggaaatccttcaagtac---ttctgtcatgtcggcatatctttggttcttacttcagtttaggttagat 8058288  T

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